User profiles for Pamela H Russell

Pamela Russell

Colorado School of Public Health
Verified email at ucdenver.edu
Cited by 6570

[HTML][HTML] Genome-wide imputation study identifies novel HLA locus for pulmonary fibrosis and potential role for auto-immunity in fibrotic idiopathic interstitial …

…, W Zhang, IV Yang, HC Ainsworth, PH Russell… - BMC genetics, 2016 - Springer
Background Fibrotic idiopathic interstitial pneumonias (fIIP) are a group of fatal lung diseases
with largely unknown etiology and without definitive treatment other than lung transplant to …

[HTML][HTML] A large-scale analysis of bioinformatics code on GitHub

PH Russell, RL Johnson, S Ananthan, B Harnke… - PloS one, 2018 - journals.plos.org
In recent years, the explosion of genomic data and bioinformatic tools has been accompanied
by a growing conversation around reproducibility of results and usability of software. …

Unsupervised discovery of phenotype-specific multi-omics networks

WJ Shi, Y Zhuang, PH Russell, BD Hobbs… - …, 2019 - academic.oup.com
Motivation Complex diseases often involve a wide spectrum of phenotypic traits. Better
understanding of the biological mechanisms relevant to each trait promotes understanding of the …

[HTML][HTML] Model based heritability scores for high-throughput sequencing data

P Rudra, WJ Shi, B Vestal, PH Russell, A Odell… - BMC …, 2017 - Springer
Background Heritability of a phenotypic or molecular trait measures the proportion of
variance that is attributable to genotypic variance. It is an important concept in breeding and …

[HTML][HTML] miR-MaGiC improves quantification accuracy for small RNA-seq

PH Russell, B Vestal, W Shi, PD Rudra, R Dowell… - BMC Research …, 2018 - Springer
Objective Many tools have been developed to profile microRNA (miRNA) expression from
small RNA-seq data. These tools must contend with several issues: the small size of miRNAs, …

[HTML][HTML] Radtools: R utilities for convenient extraction of medical image metadata

PH Russell, D Ghosh - F1000Research, 2018 - ncbi.nlm.nih.gov
The radiology community has adopted several widely used standards for medical image files,
including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (…

BioCantor: a Python library for genomic feature arithmetic in arbitrarily related coordinate systems

PH Russell, IT Fiddes - bioRxiv, 2021 - biorxiv.org
Motivation Bioinformaticians frequently navigate among a diverse set of coordinate systems:
for example, converting between genomic, transcript, and protein coordinates. The …

[PDF][PDF] Radtools: R utilities for smooth navigation of medical imag e data [version 1; peer review: 2 not approved]

PH Russell, D Ghosh - pdfs.semanticscholar.org
The radiology community has adopted several widely used standards for medical image files,
including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (…

Radtools: R utilities for smooth navigation of medical image data

PH Russell, D Ghosh - bioRxiv, 2018 - biorxiv.org
The radiology community has adopted several widely used standards for medical image files,
including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (…

Personality similarity and quality of marriage

RJH Russell, PA Wells - Personality and Individual Differences, 1991 - Elsevier
… Each couple received two questionnaires: the Marriage Questionnaire authored by
Russell and Wells (unpublished) and the short form of the Revised Eysenck Personality …