BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Motivation: Genomics has revolutionized biological research, but quality assessment of the
resulting assembled sequences is complicated and remains mostly limited to technical …
resulting assembled sequences is complicated and remains mostly limited to technical …
BUSCO applications from quality assessments to gene prediction and phylogenomics
Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly
changing technologies and expanding data volumes make evaluation of completeness a …
changing technologies and expanding data volumes make evaluation of completeness a …
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
OrthoDB is a comprehensive catalog of orthologs, genes inherited by extant species from a
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
…, FA Simao, IA Pozdnyakov, P Ioannidis… - Nucleic acids …, 2015 - academic.oup.com
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …
studies. With the ever-increasing availability of genomic data, inference of orthology has …
[HTML][HTML] Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary …
…, S Haddad, Y Han, DST Hughes, P Ioannidis… - Genome biology, 2016 - Springer
Background Relatively little is known about the genomic basis and evolution of wood-feeding
in beetles. We undertook genome sequencing and annotation, gene expression assays, …
in beetles. We undertook genome sequencing and annotation, gene expression assays, …
[HTML][HTML] Unique features of a global human ectoparasite identified through sequencing of the bed bug genome
The bed bug, Cimex lectularius, has re-established itself as a ubiquitous human ectoparasite
throughout much of the world during the past two decades. This global resurgence is likely …
throughout much of the world during the past two decades. This global resurgence is likely …
[PDF][PDF] A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor
Gall-forming arthropods are highly specialized herbivores that, in combination with their
hosts, produce extended phenotypes with unique morphologies [1]. Many are economically …
hosts, produce extended phenotypes with unique morphologies [1]. Many are economically …
[HTML][HTML] Gene content evolution in the arthropods
Background Arthropods comprise the largest and most diverse phylum on Earth and play
vital roles in nearly every ecosystem. Their diversity stems in part from variations on a …
vital roles in nearly every ecosystem. Their diversity stems in part from variations on a …
[HTML][HTML] Alzheimer's disease and frontotemporal dementia: A robust classification method of EEG signals and a comparison of validation methods
Dementia is the clinical syndrome characterized by progressive loss of cognitive and
emotional abilities to a degree severe enough to interfere with daily functioning. Alzheimer’s …
emotional abilities to a degree severe enough to interfere with daily functioning. Alzheimer’s …
Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and …
Metaseiulus occidentalis is an eyeless phytoseiid predatory mite employed for the biological
control of agricultural pests including spider mites. Despite appearances, these predator …
control of agricultural pests including spider mites. Despite appearances, these predator …