User profiles for Panagiotis Ioannidis

Panagiotis Ioannidis

- Verified email at ics.forth.gr - Cited by 14938

Panagiotis Ioannidis

- Verified email at auth.gr - Cited by 1264

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

FA Simão, RM Waterhouse, P Ioannidis… - …, 2015 - academic.oup.com
Motivation: Genomics has revolutionized biological research, but quality assessment of the
resulting assembled sequences is complicated and remains mostly limited to technical …

BUSCO applications from quality assessments to gene prediction and phylogenomics

…, FA Simão, M Manni, P Ioannidis… - Molecular biology …, 2018 - academic.oup.com
Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly
changing technologies and expanding data volumes make evaluation of completeness a …

OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

…, RM Waterhouse, FA Simão, P Ioannidis… - Nucleic acids …, 2017 - academic.oup.com
OrthoDB is a comprehensive catalog of orthologs, genes inherited by extant species from a
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

…, FA Simao, IA Pozdnyakov, P Ioannidis… - Nucleic acids …, 2015 - academic.oup.com
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …

[HTML][HTML] Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary …

…, S Haddad, Y Han, DST Hughes, P Ioannidis… - Genome biology, 2016 - Springer
Background Relatively little is known about the genomic basis and evolution of wood-feeding
in beetles. We undertook genome sequencing and annotation, gene expression assays, …

[HTML][HTML] Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

…, W Blenau, R Predel, PR Johnston, P Ioannidis… - Nature …, 2016 - nature.com
The bed bug, Cimex lectularius, has re-established itself as a ubiquitous human ectoparasite
throughout much of the world during the past two decades. This global resurgence is likely …

[PDF][PDF] A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor

…, Y Han, F Hauser, N Herndon, M Holder, P Ioannidis… - Current Biology, 2015 - cell.com
Gall-forming arthropods are highly specialized herbivores that, in combination with their
hosts, produce extended phenotypes with unique morphologies [1]. Many are economically …

[HTML][HTML] Gene content evolution in the arthropods

…, M Hatakeyama, L Hering, WB Hunter, P Ioannidis… - Genome biology, 2020 - Springer
Background Arthropods comprise the largest and most diverse phylum on Earth and play
vital roles in nearly every ecosystem. Their diversity stems in part from variations on a …

[HTML][HTML] Alzheimer's disease and frontotemporal dementia: A robust classification method of EEG signals and a comparison of validation methods

…, N Giannakeas, MG Tsipouras, T Afrantou, P Ioannidis… - Diagnostics, 2021 - mdpi.com
Dementia is the clinical syndrome characterized by progressive loss of cognitive and
emotional abilities to a degree severe enough to interfere with daily functioning. Alzheimer’s …

Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and …

…, K Wu, AS Estep, P Ioannidis… - Genome biology and …, 2016 - academic.oup.com
Metaseiulus occidentalis is an eyeless phytoseiid predatory mite employed for the biological
control of agricultural pests including spider mites. Despite appearances, these predator …