User profiles for Paul A. Khavari
Paul KhavariStanford University Verified email at stanford.edu Cited by 28844 |
[HTML][HTML] Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma
To define the cellular composition and architecture of cutaneous squamous cell carcinoma (cSCC),
we combined single-cell RNA sequencing with spatial transcriptomics and …
we combined single-cell RNA sequencing with spatial transcriptomics and …
Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex
H Kwon, AN Imbalzano, PA Khavari, RE Kingston… - Nature, 1994 - nature.com
CHROMATIN structure can affect the transcriptional activity of eukaryotic structural genes by
blocking access of sequence-specific activator proteins (activators) to their promoter-binding …
blocking access of sequence-specific activator proteins (activators) to their promoter-binding …
Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
SK Longo, MG Guo, AL Ji, PA Khavari - Nature Reviews Genetics, 2021 - nature.com
Single-cell RNA sequencing (scRNA-seq) identifies cell subpopulations within tissue but
does not capture their spatial distribution nor reveal local networks of intercellular …
does not capture their spatial distribution nor reveal local networks of intercellular …
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
We present Omni-ATAC, an improved ATAC-seq protocol for chromatin accessibility
profiling that works across multiple applications with substantial improvement of signal-to-…
profiling that works across multiple applications with substantial improvement of signal-to-…
Control of somatic tissue differentiation by the long non-coding RNA TINCR
Several of the thousands of human long non-coding RNAs (lncRNAs) have been
functionally characterized 1 , 2 , 3 , 4 ; however, potential roles for lncRNAs in somatic tissue …
functionally characterized 1 , 2 , 3 , 4 ; however, potential roles for lncRNAs in somatic tissue …
Purification and biochemical heterogeneity of the mammalian SWI‐SNF complex.
We have purified distinct complexes of nine to 12 proteins [referred to as BRG1‐associated
factors (BAFs)] from several mammalian cell lines using an antibody to the SWI2‐SNF2 …
factors (BAFs)] from several mammalian cell lines using an antibody to the SWI2‐SNF2 …
Conjugation of arginine oligomers to cyclosporin A facilitates topical delivery and inhibition of inflammation
…, E Kreider, PL McGrane, PA Wender, PA Khavari - Nature medicine, 2000 - nature.com
Many systemically effective drugs such as cyclosporin A are ineffective topically because of
their poor penetration into skin. To surmount this problem, we conjugated a heptamer of …
their poor penetration into skin. To surmount this problem, we conjugated a heptamer of …
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
Genome conformation is central to gene control but challenging to interrogate. Here we
present HiChIP, a protein-centric chromatin conformation method. HiChIP improves the yield of …
present HiChIP, a protein-centric chromatin conformation method. HiChIP improves the yield of …
BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription
SEQUENCE-SPECIFIC DNA binding activators of gene transcription may be assisted by
SWI2(SNF2) 1,2 , which contains a DNA-depen-dent ATPase domain 3 . We have isolated a …
SWI2(SNF2) 1,2 , which contains a DNA-depen-dent ATPase domain 3 . We have isolated a …
The retinoblastoma protein and BRG1 form a complex and cooperate to induce cell cycle arrest
JL Dunaief, BE Strober, S Guha, PA Khavari, K Ålin… - Cell, 1994 - cell.com
The retinoblastoma tumor suppressor protein (RB) binds several cellular proteins involved
in cell cycle progression. Using the yeast two-hybrid system, we found that RB bound …
in cell cycle progression. Using the yeast two-hybrid system, we found that RB bound …