User profiles for Paul Adams
Paul D. AdamsLawrence Berkeley Laboratory & University of California Berkeley Verified email at lbl.gov Cited by 121670 |
[HTML][HTML] PHENIX: a comprehensive Python-based system for macromolecular structure solution
PD Adams, PV Afonine, G Bunkóczi… - … Section D: Biological …, 2010 - scripts.iucr.org
Macromolecular X-ray crystallography is routinely applied to understand biological processes
at a molecular level. However, significant time and effort are still required to solve and …
at a molecular level. However, significant time and effort are still required to solve and …
Crystallography & NMR system: A new software suite for macromolecular structure determination
A new software suite, called Crystallography & NMR System (CNS), has been developed for
macromolecular structure determination by X-ray crystallography or solution nuclear …
macromolecular structure determination by X-ray crystallography or solution nuclear …
[HTML][HTML] PHENIX: building new software for automated crystallographic structure determination
Structural genomics seeks to expand rapidly the number of protein structures in order to
extract the maximum amount of information from genomic sequence databases. The advent of …
extract the maximum amount of information from genomic sequence databases. The advent of …
Improvement of cryo-EM maps by density modification
A density-modification procedure for improving maps from single-particle electron cryogenic
microscopy (cryo-EM) is presented. The theoretical basis of the method is identical to that of …
microscopy (cryo-EM) is presented. The theoretical basis of the method is identical to that of …
Accurate prediction of protein structures and interactions using a three-track neural network
DeepMind presented notably accurate predictions at the recent 14th Critical Assessment of
Structure Prediction (CASP14) conference. We explored network architectures that …
Structure Prediction (CASP14) conference. We explored network architectures that …
[HTML][HTML] Phaser crystallographic software
Phaser is a program for phasing macromolecular crystal structures by both molecular
replacement and experimental phasing methods. The novel phasing algorithms implemented in …
replacement and experimental phasing methods. The novel phasing algorithms implemented in …
[HTML][HTML] Towards automated crystallographic structure refinement with phenix. refine
phenix.refine is a program within the PHENIX package that supports crystallographic structure
refinement against experimental data with a wide range of upper resolution limits using a …
refinement against experimental data with a wide range of upper resolution limits using a …
[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
…, LL Videau, CJ Williams, PD Adams - … Section D: Structural …, 2019 - scripts.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful
methods to determine three-dimensional macromolecular structures, which are required to …
methods to determine three-dimensional macromolecular structures, which are required to …
MolProbity: More and better reference data for improved all‐atom structure validation
…, WB Arendall III, J Snoeyink, PD Adams… - Protein …, 2018 - Wiley Online Library
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …
are provided at the MolProbity website, emphasizing changes and additions since the …
[HTML][HTML] Real-space refinement in PHENIX for cryo-EM and crystallography
…, TC Terwilliger, A Urzhumtsev, PD Adams - … Section D: Structural …, 2018 - scripts.iucr.org
This article describes the implementation of real-space refinement in the phenix.real_space_refine
program from the PHENIX suite. The use of a simplified refinement target function …
program from the PHENIX suite. The use of a simplified refinement target function …