User profiles for Paul Pavlidis

Paul Pavlidis

Professor of Psychiatry, University of British Columbia
Verified email at msl.ubc.ca
Cited by 18393

Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons

…, V Yerko, YC Wang, SJ Tripathy, P Pavlidis… - Nature …, 2020 - nature.com
Major depressive disorder (MDD) has an enormous impact on global disease burden, affecting
millions of people worldwide and ranking as a leading cause of disability for almost three …

Coexpression analysis of human genes across many microarray data sets

HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis - Genome research, 2004 - genome.cshlp.org
We present a large-scale analysis of mRNA coexpression based on 60 large human data
sets containing a total of 3924 microarrays. We sought pairs of genes that were reliably …

Molecular and functional heterogeneity of hyperpolarization-activated pacemaker channels in the mouse CNS

B Santoro, S Chen, A Lüthi, P Pavlidis… - Journal of …, 2000 - Soc Neuroscience
The hyperpolarization-activated cation current (termedI h ,I q , orI f ) was recently shown to
be encoded by a new family of genes, named HCN forhyperpolarization-activated …

Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model

…, A Bagchi, WS Lai, H Liu, R Hsu, X Wan, P Pavlidis… - Nature …, 2008 - nature.com
Individuals with 22q11.2 microdeletions show behavioral and cognitive deficits and are at
high risk of developing schizophrenia. We analyzed an engineered mouse strain carrying a …

[PDF][PDF] Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth

…, L Chotard, M Kahli, A Le Digarcher, P Pavlidis… - Developmental cell, 2006 - cell.com
Genomic imprinting is an epigenetic mechanism of regulation that restrains the expression
of a small subset of mammalian genes to one parental allele. The reason for the targeting of …

[HTML][HTML] An expanded evaluation of protein function prediction methods shows an improvement in accuracy

…, A Paccanaro, J Gillis, AE Sedeño-Cortés, P Pavlidis… - Genome biology, 2016 - Springer
Background A major bottleneck in our understanding of the molecular underpinnings of life
is the assignment of function to proteins. While molecular experiments provide the most …

Matrix2png: a utility for visualizing matrix data

P Pavlidis, WS Noble - Bioinformatics, 2003 - academic.oup.com
We describe a simple software tool, ‘matrix2png’, for creating color images of matrix data.
Originally designed with the display of microarray data sets in mind, it is a general tool that can …

Gene functional classification from heterogeneous data

P Pavlidis, J Weston, J Cai, WN Grundy - Proceedings of the fifth annual …, 2001 - dl.acm.org
In our attempts to understand cellular function at the molecular level, we must be able to
synthesize information from disparate types of genomic data. We consider the problem of …

De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability

…, J Lihm, S Yoon, Y Berstein, M Mistry, P Pavlidis… - Molecular …, 2014 - nature.com
Schizophrenia is a serious psychiatric disorder with a broadly undiscovered genetic etiology.
Recent studies of de novo mutations (DNMs) in schizophrenia and autism have reinforced …

Learning gene functional classifications from multiple data types

P Pavlidis, J Weston, J Cai, WS Noble - Journal of computational …, 2002 - liebertpub.com
In our attempts to understand cellular function at the molecular level, we must be able to
synthesize information from disparate types of genomic data. We consider the problem of …