User profiles for Paul Pavlidis
Paul PavlidisProfessor of Psychiatry, University of British Columbia Verified email at msl.ubc.ca Cited by 18393 |
Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons
…, V Yerko, YC Wang, SJ Tripathy, P Pavlidis… - Nature …, 2020 - nature.com
Major depressive disorder (MDD) has an enormous impact on global disease burden, affecting
millions of people worldwide and ranking as a leading cause of disability for almost three …
millions of people worldwide and ranking as a leading cause of disability for almost three …
Coexpression analysis of human genes across many microarray data sets
HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis - Genome research, 2004 - genome.cshlp.org
We present a large-scale analysis of mRNA coexpression based on 60 large human data
sets containing a total of 3924 microarrays. We sought pairs of genes that were reliably …
sets containing a total of 3924 microarrays. We sought pairs of genes that were reliably …
Molecular and functional heterogeneity of hyperpolarization-activated pacemaker channels in the mouse CNS
B Santoro, S Chen, A Lüthi, P Pavlidis… - Journal of …, 2000 - Soc Neuroscience
The hyperpolarization-activated cation current (termedI h ,I q , orI f ) was recently shown to
be encoded by a new family of genes, named HCN forhyperpolarization-activated …
be encoded by a new family of genes, named HCN forhyperpolarization-activated …
Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model
Individuals with 22q11.2 microdeletions show behavioral and cognitive deficits and are at
high risk of developing schizophrenia. We analyzed an engineered mouse strain carrying a …
high risk of developing schizophrenia. We analyzed an engineered mouse strain carrying a …
[PDF][PDF] Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth
…, L Chotard, M Kahli, A Le Digarcher, P Pavlidis… - Developmental cell, 2006 - cell.com
Genomic imprinting is an epigenetic mechanism of regulation that restrains the expression
of a small subset of mammalian genes to one parental allele. The reason for the targeting of …
of a small subset of mammalian genes to one parental allele. The reason for the targeting of …
[HTML][HTML] An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Background A major bottleneck in our understanding of the molecular underpinnings of life
is the assignment of function to proteins. While molecular experiments provide the most …
is the assignment of function to proteins. While molecular experiments provide the most …
Matrix2png: a utility for visualizing matrix data
P Pavlidis, WS Noble - Bioinformatics, 2003 - academic.oup.com
We describe a simple software tool, ‘matrix2png’, for creating color images of matrix data.
Originally designed with the display of microarray data sets in mind, it is a general tool that can …
Originally designed with the display of microarray data sets in mind, it is a general tool that can …
Gene functional classification from heterogeneous data
In our attempts to understand cellular function at the molecular level, we must be able to
synthesize information from disparate types of genomic data. We consider the problem of …
synthesize information from disparate types of genomic data. We consider the problem of …
De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability
Schizophrenia is a serious psychiatric disorder with a broadly undiscovered genetic etiology.
Recent studies of de novo mutations (DNMs) in schizophrenia and autism have reinforced …
Recent studies of de novo mutations (DNMs) in schizophrenia and autism have reinforced …
Learning gene functional classifications from multiple data types
In our attempts to understand cellular function at the molecular level, we must be able to
synthesize information from disparate types of genomic data. We consider the problem of …
synthesize information from disparate types of genomic data. We consider the problem of …