[PDF][PDF] Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters
…, K Downes, L Grassi, M Kostadima, P Freire-Pritchett… - Cell, 2016 - cell.com
Long-range interactions between regulatory elements and gene promoters play key roles in
transcriptional regulation. The vast majority of interactions are uncharted, constituting a …
transcriptional regulation. The vast majority of interactions are uncharted, constituting a …
[HTML][HTML] CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Capture Hi-C (CHi-C) is a method for profiling chromosomal interactions involving targeted
regions of interest, such as gene promoters, globally and at high resolution. Signal detection …
regions of interest, such as gene promoters, globally and at high resolution. Signal detection …
[PDF][PDF] An early cell shape transition drives evolutionary expansion of the human forebrain
…, M Sutcliffe, ES Riis, P Freire-Pritchett… - Cell, 2021 - cell.com
The human brain has undergone rapid expansion since humans diverged from other great
apes, but the mechanism of this human-specific enlargement is still unknown. Here, we use …
apes, but the mechanism of this human-specific enlargement is still unknown. Here, we use …
Ribosome collisions trigger cis-acting feedback inhibition of translation initiation
Translation of aberrant mRNAs can cause ribosomes to stall, leading to collisions with trailing
ribosomes. Collided ribosomes are specifically recognised by ZNF598 to initiate protein …
ribosomes. Collided ribosomes are specifically recognised by ZNF598 to initiate protein …
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
P Freire-Pritchett, S Schoenfelder, C Várnai… - Elife, 2017 - elifesciences.org
10.7554/eLife.21926.001 Long-range cis-regulatory elements such as enhancers coordinate
cell-specific transcriptional programmes by engaging in DNA looping interactions with …
cell-specific transcriptional programmes by engaging in DNA looping interactions with …
[PDF][PDF] Long-range enhancer interactions are prevalent in mouse embryonic stem cells and are reorganized upon pluripotent state transition
…, A Segonds-Pichon, SW Wingett, P Freire-Pritchett… - Cell reports, 2018 - cell.com
Transcriptional enhancers, including super-enhancers (SEs), form physical interactions with
promoters to regulate cell-type-specific gene expression. SEs are characterized by high …
promoters to regulate cell-type-specific gene expression. SEs are characterized by high …
[PDF][PDF] Genetically defined functional modules for spatial orienting in the mouse superior colliculus
L Masullo, L Mariotti, N Alexandre, P Freire-Pritchett… - Current Biology, 2019 - cell.com
In order to explore and interact with their surroundings, animals need to orient toward specific
positions in space. Throughout the animal kingdom, head movements represent a primary …
positions in space. Throughout the animal kingdom, head movements represent a primary …
[HTML][HTML] Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks
…, A Akbarov, C Wallace, P Freire-Pritchett… - Nature …, 2018 - nature.com
Long-range chromosomal interactions bring distal regulatory elements and promoters together
to regulate gene expression in biological processes. By performing promoter capture Hi-…
to regulate gene expression in biological processes. By performing promoter capture Hi-…
Detecting chromosomal interactions in Capture Hi-C data with CHiCAGO and companion tools
P Freire-Pritchett, H Ray-Jones, M Della Rosa… - Nature protocols, 2021 - nature.com
Capture Hi-C is widely used to obtain high-resolution profiles of chromosomal interactions
involving, at least on one end, regions of interest such as gene promoters. Signal detection in …
involving, at least on one end, regions of interest such as gene promoters. Signal detection in …
Epigenetic regulation of vascular smooth muscle cells by histone H3 lysine 9 dimethylation attenuates target gene-induction by inflammatory signaling
…, K Foote, A Finigan, P Freire-Pritchett… - … , and vascular biology, 2019 - Am Heart Assoc
Objective: Vascular inflammation underlies cardiovascular disease. Vascular smooth muscle
cells (VSMCs) upregulate selective genes, including MMPs (matrix metalloproteinases) …
cells (VSMCs) upregulate selective genes, including MMPs (matrix metalloproteinases) …