Genome Sequence and Assembly of Bos indicus
…, G Plastow, J Meidanis, MA Souza, P Feijao… - Journal of …, 2012 - academic.oup.com
Cattle are divided into 2 groups referred to as taurine and indicine, both of which have been
under strong artificial selection due to their importance for human nutrition. A side effect of …
under strong artificial selection due to their importance for human nutrition. A side effect of …
SCJ: a breakpoint-like distance that simplifies several rearrangement problems
P Feijao, J Meidanis - IEEE/ACM Transactions on …, 2011 - ieeexplore.ieee.org
The breakpoint distance is one of the most straightforward genome comparison measures.
Surprisingly, when it comes to defining it precisely for multichromosomal genomes with both …
Surprisingly, when it comes to defining it precisely for multichromosomal genomes with both …
MentaLiST–A fast MLST caller for large MLST schemes
MLST (multi-locus sequence typing) is a classic technique for genotyping bacteria, widely
applied for pathogen outbreak surveillance. Traditionally, MLST is based on identifying …
applied for pathogen outbreak surveillance. Traditionally, MLST is based on identifying …
The integrated rapid infectious disease analysis (IRIDA) platform
Whole genome sequencing (WGS) is a powerful tool for public health infectious disease
investigations owing to its higher resolution, greater efficiency, and cost-effectiveness over …
investigations owing to its higher resolution, greater efficiency, and cost-effectiveness over …
AMiGA: the arthropodan mitochondrial genomes accessible database
PC Feijao, LS Neiva, AML Azeredo-Espin… - …, 2006 - academic.oup.com
The Arthropodan Mitochondrial Genomes Accessible database (AMiGA) is a relational
database developed to help in managing access to the increasing amount of data arising from …
database developed to help in managing access to the increasing amount of data arising from …
Extending the algebraic formalism for genome rearrangements to include linear chromosomes
P Feijao, J Meidanis - IEEE/ACM transactions on computational …, 2012 - ieeexplore.ieee.org
Algebraic rearrangement theory, as introduced by Meidanis and Dias, focuses on representing
the order in which genes appear in chromosomes, and applies to circular chromosomes …
the order in which genes appear in chromosomes, and applies to circular chromosomes …
Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: the Muscidae (Diptera: Calyptratae) perspective
…, JG Barau, ACM Junqueira, PC Feijão… - Molecular Phylogenetics …, 2008 - Elsevier
We present the first two mitochondrial genomes of Muscidae dipterans for the species
Haematobia irritans (the horn fly) and Stomoxys calcitrans (the stable fly). Typical insect mtDNA …
Haematobia irritans (the horn fly) and Stomoxys calcitrans (the stable fly). Typical insect mtDNA …
[HTML][HTML] Reconstruction of ancestral gene orders using intermediate genomes
P Feijão - BMC bioinformatics, 2015 - Springer
Background The problem of reconstructing ancestral genomes in a given phylogenetic tree
arises in many different comparative genomics fields. Here, we focus on reconstructing the …
arises in many different comparative genomics fields. Here, we focus on reconstructing the …
Rearrangement-based phylogeny using the single-cut-or-join operation
P Biller, P Feijão, J Meidanis - IEEE/ACM Transactions on …, 2012 - ieeexplore.ieee.org
Recently, the Single-Cut-or-Join (SCJ) operation was proposed as a basis for a new
rearrangement distance between multichromosomal genomes, leading to very fast algorithms, both …
rearrangement distance between multichromosomal genomes, leading to very fast algorithms, both …
[HTML][HTML] The Clinically Actionable Molecular Profile of Early versus Late-Stage Non-Small Cell Lung Cancer, an Individual Age and Sex Propensity-Matched Pair …
…, J Yee, BLS Furman, R Aguirre Hernandez, P Feijao… - Current …, 2022 - mdpi.com
Background: Despite meticulous surgery for non-small cell lung cancer (NSCLC), relapse is
as high as 70% at 5 years. Many institutions do not conduct reflexive molecular testing on …
as high as 70% at 5 years. Many institutions do not conduct reflexive molecular testing on …