User profiles for Pete Bankhead

Peter Bankhead

University of Edinburgh
Verified email at ed.ac.uk
Cited by 8589

[HTML][HTML] QuPath: Open source software for digital pathology image analysis

P Bankhead, MB Loughrey, JA Fernández… - Scientific reports, 2017 - nature.com
QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly,
extensible, open-source solution for digital pathology and whole slide image analysis. …

Pan-cancer image-based detection of clinically actionable genetic alterations

…, J Krause, JM Niehues, KAJ Sommer, P Bankhead… - Nature cancer, 2020 - nature.com
Molecular alterations in cancer can cause phenotypic changes in tumor cells and their
microenvironment. Routine histopathology tissue slides, which are ubiquitously available, can …

Common limitations of image processing metrics: A picture story

…, M Antonelli, T Arbel, S Bakas, P Bankhead… - arXiv preprint arXiv …, 2021 - arxiv.org
While the importance of automatic image analysis is continuously increasing, recent meta-research
revealed major flaws with respect to algorithm validation. Performance metrics are …

MITI minimum information guidelines for highly multiplexed tissue images

…, MD Herrmann, N Gehlenborg, P Bankhead… - Nature …, 2022 - nature.com
The imminent release of tissue atlases combining multichannel microscopy with single-cell
sequencing and other omics data from normal and diseased specimens creates an urgent …

[HTML][HTML] Fast retinal vessel detection and measurement using wavelets and edge location refinement

P Bankhead, CN Scholfield, JG McGeown, TM Curtis - PloS one, 2012 - journals.plos.org
The relationship between changes in retinal vessel morphology and the onset and progression
of diseases such as diabetes, hypertension and retinopathy of prematurity (ROP) has …

Regulatory T cells promote myelin regeneration in the central nervous system

…, M Dittmer, R Penalva, SR Mayoral, P Bankhead… - Nature …, 2017 - nature.com
Regeneration of CNS myelin involves differentiation of oligodendrocytes from
oligodendrocyte progenitor cells. In multiple sclerosis, remyelination can fail despite abundant …

Digital pathology and image analysis in tissue biomarker research

PW Hamilton, P Bankhead, Y Wang, R Hutchinson… - Methods, 2014 - Elsevier
Digital pathology and the adoption of image analysis have grown rapidly in the last few years.
This is largely due to the implementation of whole slide scanning, advances in software …

Topography of cancer-associated immune cells in human solid tumors

…, P Charoentong, CA Weis, D Hirsch, P Bankhead… - Elife, 2018 - elifesciences.org
10.7554/eLife.36967.001 Lymphoid and myeloid cells are abundant in the tumor
microenvironment, can be quantified by immunohistochemistry and shape the disease course of …

Deep learning–based segmentation and quantification in experimental kidney histopathology

…, R Korstanje, S Menzel, P Bankhead… - Journal of the …, 2021 - journals.lww.com
Background Nephropathologic analyses provide important outcomes-related data in
experiments with the animal models that are essential for understanding kidney disease …

Translation suppression promotes stress granule formation and cell survival in response to cold shock

S Hofmann, V Cherkasova, P Bankhead… - Molecular biology of …, 2012 - Am Soc Cell Biol
Cells respond to different types of stress by inhibition of protein synthesis and subsequent
assembly of stress granules (SGs), cytoplasmic aggregates that contain stalled translation …