[HTML][HTML] The Production of Curli Amyloid Fibers Is Deeply Integrated into the Biology of Escherichia coli

DR Smith, JE Price, PE Burby, LP Blanco… - Biomolecules, 2017 - mdpi.com
Curli amyloid fibers are the major protein component of the extracellular matrix produced by
Enterobacteriaceae during biofilm formation. Curli are required for proper biofilm …

Regulation of cell division in bacteria by monitoring genome integrity and DNA replication status

PE Burby, LA Simmons - Journal of Bacteriology, 2020 - Am Soc Microbiol
All organisms regulate cell cycle progression by coordinating cell division with DNA replication
status. In eukaryotes, DNA damage or problems with replication fork progression induce …

MutS2 promotes homologous recombination in Bacillus subtilis

PE Burby, LA Simmons - Journal of bacteriology, 2017 - Am Soc Microbiol
Bacterial MutS proteins are subdivided into two families, MutS1 and MutS2. MutS1 family
members recognize DNA replication errors during their participation in the well-characterized …

Wnt target enhancer regulation by a CDX/TCF transcription factor collective and a novel DNA motif

AB Ramakrishnan, L Chen, PE Burby… - Nucleic Acids …, 2021 - academic.oup.com
Transcriptional regulation by Wnt signalling is primarily thought to be accomplished by a
complex of β-catenin and TCF family transcription factors (TFs). Although numerous studies …

[HTML][HTML] SOX9 and TCF transcription factors associate to mediate Wnt/β-catenin target gene activation in colorectal cancer

AB Ramakrishnan, PE Burby, K Adiga… - Journal of Biological …, 2023 - ASBMB
Activation of the Wnt/β-catenin pathway regulates gene expression by promoting the formation
of a β-catenin–T-cell factor (TCF) complex on target enhancers. In addition to TCFs, other …

CRISPR/Cas9 editing of the Bacillus subtilis genome

PE Burby, LA Simmons - Bio-protocol, 2017 - bio-protocol.org
A fundamental procedure for most modern biologists is the genetic manipulation of the organism
under study. Although many different methods for editing bacterial genomes have been …

[HTML][HTML] Wnt-Mediated Repression via Bipartite DNA Recognition by TCF in the Drosophila Hematopoietic System

CU Zhang, TA Blauwkamp, PE Burby… - PLoS genetics, 2014 - journals.plos.org
The Wnt/β-catenin signaling pathway plays many important roles in animal development,
tissue homeostasis and human disease. Transcription factors of the TCF family mediate many …

A bacterial DNA repair pathway specific to a natural antibiotic

PE Burby, LA Simmons - Molecular microbiology, 2019 - Wiley Online Library
All organisms possess DNA repair pathways that are used to maintain the integrity of their
genetic material. Although many DNA repair pathways are well understood, new pathways …

DNA damage checkpoint activation affects peptidoglycan synthesis and late divisome components in Bacillus subtilis

EA Masser, PE Burby, WD Hawkins… - Molecular …, 2021 - Wiley Online Library
During normal DNA replication, all cells encounter damage to their genetic material. As a
result, organisms have developed response pathways that provide time for the cell to complete …

Implementation and data analysis of Tn-seq, whole-genome resequencing, and single-molecule real-time sequencing for bacterial genetics

PE Burby, TM Nye, JW Schroeder… - Journal of …, 2017 - Am Soc Microbiol
Few discoveries have been more transformative to the biological sciences than the
development of DNA sequencing technologies. The rapid advancement of sequencing and …