User profiles for Peter J Cock

Peter Cock

James Hutton Institute (formerly known as the Scottish Crop Research Institute)
Verified email at hutton.ac.uk
Cited by 12795

Resistance gene enrichment sequencing (R en S eq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of …

…, GJ Etherington, D Maclean, PJ Cock… - The Plant …, 2013 - Wiley Online Library
RenSeq is a NB ‐ LRR (nucleotide binding‐site leucine‐rich repeat) gene‐targeted,
Resistance gene enrichment and sequencing method that enables discovery and annotation of …

[HTML][HTML] Novel bacteriophages containing a genome of another bacteriophage within their genomes

MM Swanson, B Reavy, KS Makarova, PJ Cock… - PloS one, 2012 - journals.plos.org
A novel bacteriophage infecting Staphylococus pasteuri was isolated during a screen for
phages in Antarctic soils. The phage named SpaA1 is morphologically similar to phages of the …

Activation of hatching in diapaused and quiescent Globodera pallida

JE Palomares-Rius, JT Jones, PJ Cock, P Castillo… - Parasitology, 2013 - cambridge.org
The potato cyst nematodes (PCN) Globodera pallida and G. rostochiensis are major pests
of potatoes. The G. pallida (and G. rostochiensis) life cycle includes both diapause and …

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

PJA Cock, CJ Fields, N Goto, ML Heuer… - Nucleic acids …, 2010 - academic.oup.com
FASTQ has emerged as a common file format for sharing sequencing read data combining
both the sequence and an associated per base quality score, despite lacking any formal …

[HTML][HTML] Biopython: freely available Python tools for computational molecular biology and bioinformatics

PJA Cock, T Antao, JT Chang, BA Chapman… - …, 2009 - ncbi.nlm.nih.gov
The Biopython project is a mature open source international collaboration of volunteer
developers, providing Python libraries for a wide range of bioinformatics problems. Biopython …

[HTML][HTML] BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

…, MP Campbell, Y Chen, H Chiba, PJA Cock… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …

Evolution of prokaryotic two-component systems: insights from comparative genomics

DE Whitworth, PJA Cock - Amino Acids, 2009 - Springer
Two-component systems (TCSs) are diverse and abundant signal transduction pathways
found predominantly in prokaryotes. This review focuses on insights into TCS evolution made …

Using Tablet for visual exploration of second-generation sequencing data

I Milne, G Stephen, M Bayer, PJA Cock… - Briefings in …, 2013 - academic.oup.com
Peter JA Cock Peter Cock not only works on plant pathogen genomics at JHI, but also
contributes to open source science projects such as the Galaxy workflow system and Biopython. …

[HTML][HTML] Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus

…, T Takanashi, IJ Tsai, SA Assefa, PJA Cock… - PLoS …, 2011 - journals.plos.org
Bursaphelenchus xylophilus is the nematode responsible for a devastating epidemic of pine
wilt disease in Asia and Europe, and represents a recent, independent origin of plant …

[HTML][HTML] Identification and localisation of the NB-LRR gene family within the potato genome

…, L Pritchard, GJ Etherington, K MacKenzie, PJA Cock… - BMC genomics, 2012 - Springer
Background The potato genome sequence derived from the Solanum tuberosum Group
Phureja clone DM1-3 516 R44 provides unparalleled insight into the genome composition and …