User profiles for Peter J Cock
Peter CockJames Hutton Institute (formerly known as the Scottish Crop Research Institute) Verified email at hutton.ac.uk Cited by 12795 |
Resistance gene enrichment sequencing (R en S eq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of …
RenSeq is a NB ‐ LRR (nucleotide binding‐site leucine‐rich repeat) gene‐targeted,
Resistance gene enrichment and sequencing method that enables discovery and annotation of …
Resistance gene enrichment and sequencing method that enables discovery and annotation of …
[HTML][HTML] Novel bacteriophages containing a genome of another bacteriophage within their genomes
MM Swanson, B Reavy, KS Makarova, PJ Cock… - PloS one, 2012 - journals.plos.org
A novel bacteriophage infecting Staphylococus pasteuri was isolated during a screen for
phages in Antarctic soils. The phage named SpaA1 is morphologically similar to phages of the …
phages in Antarctic soils. The phage named SpaA1 is morphologically similar to phages of the …
Activation of hatching in diapaused and quiescent Globodera pallida
JE Palomares-Rius, JT Jones, PJ Cock, P Castillo… - Parasitology, 2013 - cambridge.org
The potato cyst nematodes (PCN) Globodera pallida and G. rostochiensis are major pests
of potatoes. The G. pallida (and G. rostochiensis) life cycle includes both diapause and …
of potatoes. The G. pallida (and G. rostochiensis) life cycle includes both diapause and …
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
FASTQ has emerged as a common file format for sharing sequencing read data combining
both the sequence and an associated per base quality score, despite lacking any formal …
both the sequence and an associated per base quality score, despite lacking any formal …
[HTML][HTML] Biopython: freely available Python tools for computational molecular biology and bioinformatics
The Biopython project is a mature open source international collaboration of volunteer
developers, providing Python libraries for a wide range of bioinformatics problems. Biopython …
developers, providing Python libraries for a wide range of bioinformatics problems. Biopython …
[HTML][HTML] BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
…, MP Campbell, Y Chen, H Chiba, PJA Cock… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …
Evolution of prokaryotic two-component systems: insights from comparative genomics
DE Whitworth, PJA Cock - Amino Acids, 2009 - Springer
Two-component systems (TCSs) are diverse and abundant signal transduction pathways
found predominantly in prokaryotes. This review focuses on insights into TCS evolution made …
found predominantly in prokaryotes. This review focuses on insights into TCS evolution made …
Using Tablet for visual exploration of second-generation sequencing data
I Milne, G Stephen, M Bayer, PJA Cock… - Briefings in …, 2013 - academic.oup.com
… Peter JA Cock Peter Cock not only works on plant pathogen genomics at JHI, but also
contributes to open source science projects such as the Galaxy workflow system and Biopython. …
contributes to open source science projects such as the Galaxy workflow system and Biopython. …
[HTML][HTML] Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
Bursaphelenchus xylophilus is the nematode responsible for a devastating epidemic of pine
wilt disease in Asia and Europe, and represents a recent, independent origin of plant …
wilt disease in Asia and Europe, and represents a recent, independent origin of plant …
[HTML][HTML] Identification and localisation of the NB-LRR gene family within the potato genome
Background The potato genome sequence derived from the Solanum tuberosum Group
Phureja clone DM1-3 516 R44 provides unparalleled insight into the genome composition and …
Phureja clone DM1-3 516 R44 provides unparalleled insight into the genome composition and …