User profiles for Peter Park

Peter J Park

Harvard Medical School
Verified email at harvard.edu
Cited by 134569

[HTML][HTML] The somatic genomic landscape of glioblastoma

…, PC Chen, A Hadjipanayis, E Lee, S Lee, PJ Park… - cell, 2013 - cell.com
We describe the landscape of somatic genomic alterations based on multidimensional and
comprehensive characterization of more than 500 glioblastoma tumors (GBMs). We identify …

[PDF][PDF] Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma

…, QT Ostrom, C Palmer, A Pantazi, M Parfenov, PJ Park… - Cell, 2016 - cell.com
Therapy development for adult diffuse glioma is hindered by incomplete knowledge of somatic
glioma driving alterations and suboptimal disease classification. We defined the complete …

ChIP–seq: advantages and challenges of a maturing technology

PJ Park - Nature reviews genetics, 2009 - nature.com
Chromatin immunoprecipitation followed by sequencing (ChIP–seq) is a technique for
genome-wide profiling of DNA-binding proteins, histone modifications or nucleosomes. Owing to …

[PDF][PDF] Integrated genomic characterization of papillary thyroid carcinoma

…, BA Ozenberger, A Pantazi, M Parfenov, PJ Park… - Cell, 2014 - cell.com
Papillary thyroid carcinoma (PTC) is the most common type of thyroid cancer. Here, we
describe the genomic landscape of 496 PTCs. We observed a low frequency of somatic …

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

…, L Ma, A Milosavljevic, RM Myers, PJ Park… - Genome …, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq)
has become a valuable and widely used approach for mapping the genomic location of …

[PDF][PDF] Comprehensive characterization of cancer driver genes and mutations

…, C Suphavilai, JY Ko, E Khurana, PJ Park… - Cell, 2018 - cell.com
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize them on …

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

…, BR Graveley, S Lewis, G Micklem, B Oliver, PJ Park… - Science, 2010 - science.org
To gain insight into how genomic information is translated into cellular and developmental
programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) …

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

…, MY Tolstorukov, LJ Luquette, R Xi, YL Jung, RW Park… - Nature, 2011 - nature.com
Chromatin is composed of DNA and a variety of modified histones and non-histone proteins,
which have an impact on cell differentiation, gene regulation and other key cellular …

Design and analysis of ChIP-seq experiments for DNA-binding proteins

PV Kharchenko, MY Tolstorukov, PJ Park - Nature biotechnology, 2008 - nature.com
Recent progress in massively parallel sequencing platforms has enabled genome-wide
characterization of DNA-associated proteins using the combination of chromatin …

[HTML][HTML] HiGlass: web-based visual exploration and analysis of genome interaction maps

…, J Hwang, S Lee, BH Alver, H Pfister, LA Mirny, PJ Park… - Genome biology, 2018 - Springer
We present HiGlass, an open source visualization tool built on web technologies that
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …