User profiles for Phillip Richmond

Phillip A Richmond

BC Children's Hospital Research Institute
Verified email at bcchr.ca
Cited by 2871

JASPAR 2020: update of the open-access database of transcription factor binding profiles

…, R Van der Lee, X Zhang, PA Richmond… - Nucleic acids …, 2020 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for …

Polyploidy can drive rapid adaptation in yeast

AM Selmecki, YE Maruvka, PA Richmond, M Guillet… - Nature, 2015 - nature.com
Polyploidy is observed across the tree of life, yet its influence on evolution remains incompletely
understood 1 , 2 , 3 , 4 . Polyploidy, usually whole-genome duplication, is proposed to …

Human germline heterozygous gain-of-function STAT6 variants cause severe allergic disease

…, S Lin, Q Philippot, PA Richmond… - Journal of Experimental …, 2023 - rupress.org
STAT6 (signal transducer and activator of transcription 6) is a transcription factor that plays
a central role in the pathophysiology of allergic inflammation. We have identified 16 patients …

[HTML][HTML] ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data

E Dolzhenko, MF Bennett, PA Richmond, B Trost… - Genome biology, 2020 - Springer
Repeat expansions are responsible for over 40 monogenic disorders, and undoubtedly
more pathogenic repeat expansions remain to be discovered. Existing methods for detecting …

Prolonged Cre expression driven by the α-myosin heavy chain promoter can be cardiotoxic

EK Pugach, PA Richmond, JG Azofeifa… - Journal of molecular and …, 2015 - Elsevier
Studying the importance of genetic factors in a desired cell type or tissue necessitates the
use of precise genetic tools. With the introduction of bacteriophage Cre recombinase/loxP …

[HTML][HTML] Glutaminase Deficiency Caused by Short Tandem Repeat Expansion in GLS

…, M Tarailo-Graovac, PA Richmond… - … England Journal of …, 2019 - Mass Medical Soc
We report an inborn error of metabolism caused by an expansion of a GCA-repeat tract in
the 5′ untranslated region of the gene encoding glutaminase (GLS) that was identified …

Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data

…, BM Grande, E Karlins, TN Phung, PA Richmond… - …, 2019 - academic.oup.com
Background Mammalian X and Y chromosomes share a common evolutionary origin and
retain regions of high sequence similarity. Similar sequence content can confound the …

Genome-wide dose-dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super-enhancers

GJ Sanchez, PA Richmond, EN Bunker… - Nucleic acids …, 2018 - academic.oup.com
Histone deacetylase inhibitors (HDACIs) are known to alter gene expression by both up- and
down-regulation of protein-coding genes in normal and cancer cells. However, the exact …

[HTML][HTML] REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats

…, S Fazal, A Halman, B Jadhav, Y Qiu, PA Richmond… - Genome medicine, 2022 - Springer
Background Expansions of short tandem repeats are the cause of many neurogenetic disorders
including familial amyotrophic lateral sclerosis, Huntington disease, and many others. …

[PDF][PDF] Genome-wide sequencing and the clinical diagnosis of genetic disease: The CAUSES study

…, JJ Peng, MS Patel, S Race, P Richmond… - Human Genetics and …, 2022 - cell.com
Genome-wide sequencing (GWS) is a standard of care for diagnosis of suspected genetic
disorders, but the proportion of patients found to have pathogenic or likely pathogenic variants …