User profiles for Pier F Palamara
Pier Francesco PalamaraUniversity of Oxford Verified email at broadinstitute.org Cited by 6118 |
[HTML][HTML] Quantification of frequency-dependent genetic architectures in 25 UK Biobank traits reveals action of negative selection
Understanding the role of rare variants is important in elucidating the genetic basis of human
disease. Negative selection can cause rare variants to have larger per-allele effect sizes …
disease. Negative selection can cause rare variants to have larger per-allele effect sizes …
North African Jewish and non-Jewish populations form distinctive, orthogonal clusters
CL Campbell, PF Palamara… - Proceedings of the …, 2012 - National Acad Sciences
North African Jews constitute the second largest Jewish Diaspora group. However, their
relatedness to each other; to European, Middle Eastern, and other Jewish Diaspora groups; and …
relatedness to each other; to European, Middle Eastern, and other Jewish Diaspora groups; and …
Reference-based phasing using the Haplotype Reference Consortium panel
Haplotype phasing is a fundamental problem in medical and population genetics. Phasing
is generally performed via statistical phasing in a genotyped cohort, an approach that can …
is generally performed via statistical phasing in a genotyped cohort, an approach that can …
Linkage disequilibrium–dependent architecture of human complex traits shows action of negative selection
Recent work has hinted at the linkage disequilibrium (LD)-dependent architecture of human
complex traits, where SNPs with low levels of LD (LLD) have larger per-SNP heritability. …
complex traits, where SNPs with low levels of LD (LLD) have larger per-SNP heritability. …
[HTML][HTML] Biobank-scale inference of ancestral recombination graphs enables genealogical analysis of complex traits
…, ÁF Gunnarsson, F Cooper, PF Palamara - Nature Genetics, 2023 - nature.com
… a–f, We benchmark ARG inference performance for ARG-Needle, ASMC-clust, Relate,
tsinfer and a variation of tsinfer for sparse data (‘tsinfer-sparse’) in realistic CEU demography …
tsinfer and a variation of tsinfer for sparse data (‘tsinfer-sparse’) in realistic CEU demography …
Fast and accurate long-range phasing in a UK Biobank cohort
PR Loh, PF Palamara, AL Price - Nature genetics, 2016 - nature.com
Recent work has leveraged the extensive genotyping of the Icelandic population to perform
long-range phasing (LRP), enabling accurate imputation and association analysis of rare …
long-range phasing (LRP), enabling accurate imputation and association analysis of rare …
Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations
The selective pressures that shape clonal evolution in healthy individuals are largely unknown.
Here we investigate 8,342 mosaic chromosomal alterations, from 50 kb to 249 Mb long, …
Here we investigate 8,342 mosaic chromosomal alterations, from 50 kb to 249 Mb long, …
[PDF][PDF] Length distributions of identity by descent reveal fine-scale demographic history
Data-driven studies of identity by descent (IBD) were recently enabled by high-resolution
genomic data from large cohorts and scalable algorithms for IBD detection. Yet, haplotype …
genomic data from large cohorts and scalable algorithms for IBD detection. Yet, haplotype …
[PDF][PDF] Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry
For more than a century, Jews and non-Jews alike have tried to define the relatedness of
contemporary Jewish people. Previous genetic studies of blood group and serum markers …
contemporary Jewish people. Previous genetic studies of blood group and serum markers …
Quantification of frequency-dependent genetic architectures and action of negative selection in 25 UK Biobank traits
Understanding the role of rare variants is important in elucidating the genetic basis of human
diseases and complex traits. It is widely believed that negative selection can cause rare …
diseases and complex traits. It is widely believed that negative selection can cause rare …