User profiles for R. T. Raborn

R. Taylor Raborn

Associate Principal Investigator in Bioinformatics, NBACC
Verified email at st.dhs.gov
Cited by 416

[HTML][HTML] Adeno-associated virus type 2 in US children with acute severe hepatitis

…, J Vinjé, HL Kirking, DA Wadford, RT Raborn… - Nature, 2023 - nature.com
As of August 2022, clusters of acute severe hepatitis of unknown aetiology in children have
been reported from 35 countries, including the USA 1 , 2 . Previous studies have found …

A New Reference Genome Assembly for the Microcrustacean Daphnia pulex

…, J Lopez, B Harker, RT Raborn… - G3: Genes …, 2017 - academic.oup.com
… Similar to the procedure of classifying LTR elements into different subclades, RT sequences
were extracted and used to classify different non-LTR elements. DNA transposons were …

[PDF][PDF] The Xa7 resistance gene guards the rice susceptibility gene SWEET14 against exploitation by the bacterial blight pathogen

D Luo, JC Huguet-Tapia, RT Raborn, FF White… - Plant …, 2021 - cell.com
Many plant disease resistance (R) genes function specifically in reaction to the presence of
cognate effectors from a pathogen. Xanthomonas oryzae pathovar oryzae (Xoo) uses …

Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq

RA Policastro, RT Raborn, VP Brendel… - Genome …, 2020 - genome.cshlp.org
Accurate mapping of transcription start sites (TSSs) is key for understanding transcriptional
regulation. However, current protocols for genome-wide TSS profiling are laborious and/or …

Residue 33 of human equilibrative nucleoside transporter 2 is a functionally important component of both the dipyridamole and nucleoside binding sites

F Visser, J Zhang, RT Raborn, SA Baldwin… - Molecular …, 2005 - ASPET
Human equilibrative nucleoside transporters 1 and 2 (hENT1 and hENT2) differ functionally
in that hENT2 generally displays lower affinity for its nucleoside permeants and is less …

Promoter Architecture and Sex-Specific Gene Expression in Daphnia pulex

RT Raborn, K Spitze, VP Brendel, M Lynch - Genetics, 2016 - academic.oup.com
… Prior to sequencing, relative mRNA:rRNA (ribosomal RNA) ratios were measured for each
CAGE library using quantitative RT-PCR (qRT-PCR) with SYBR Green I (Life Technologies). …

Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa

Z Ye, C Zhao, RT Raborn, M Lin, W Wei… - Molecular biology …, 2022 - academic.oup.com
Genetic variants of mitochondrial DNA at the individual (heteroplasmy) and population (polymorphism)
levels provide insight into their roles in multiple cellular and evolutionary …

Adeno-associated virus type 2 in children from the United States with acute severe hepatitis

…, J Vinjé, HL Kirking, DA Wadford, RT Raborn… - MedRxiv, 2022 - medrxiv.org
As of August 2022, cases of acute severe hepatitis of unknown etiology in children have been
reported from 35 countries, including the United States. Here we used PCR testing, viral …

Using RAMPAGE to identify and annotate promoters in insect genomes

RT Raborn, VP Brendel - Insect Genomics: Methods and Protocols, 2019 - Springer
… We demonstrate this using the software tools GoRAMPAGE (Brendel and Raborn,
GoRAMPAGE—A workflow for promoter detection by 5′-read mapping. https://github.com/…

Comparison of the interaction of uridine, cytidine, and other pyrimidine nucleoside analogues with recombinant human equilibrative nucleoside transporter 2 (hENT2) …

…, J Zhang, J Charania, RT Raborn… - … and cell biology, 2002 - cdnsciencepub.com
Les transporteurs de nucléosides équilibrant 1 et 2 humains (hENT1, hENT2) ont 50% de
leurs acides aminés identiques et ont une sélectivité étendue envers les nucléosides puriques …