Lessons in de novo peptide sequencing by tandem mass spectrometry

KF Medzihradszky, RJ Chalkley - Mass spectrometry reviews, 2015 - Wiley Online Library
Mass spectrometry has become the method of choice for the qualitative and quantitative
characterization of protein mixtures isolated from all kinds of living organisms. The raw data in …

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

…, G Mayer, L Gatto, A Campos, RJ Chalkley… - Nature …, 2014 - nature.com
Individual resources can join ProteomeXchange by implementing the ProteomeXchange
data submission and dissemination guidelines, and metadata requirements. In the current …

NGF and ProNGF: Regulation of neuronal and neoplastic responses through receptor signaling

RA Bradshaw, J Pundavela, J Biarc, RJ Chalkley… - Advances in biological …, 2015 - Elsevier
Nerve growth factor (NGF) and its precursor (proNGF) are primarily considered as regulators
of neuronal function that induce their responses via the tyrosine kinase receptor TrkA and …

High resolution acrylamide gel electrophoresis of histones

S Panyim, R Chalkley - Archives of Biochemistry and Biophysics, 1969 - Elsevier
A high resolution gel electrophoresis of histone is described, capable of distinguishing
between histone fractions whose mobilities differ by as little as 1%. Under the conditions of pH …

[HTML][HTML] Modification site localization scoring: strategies and performance

RJ Chalkley, KR Clauser - Molecular & Cellular Proteomics, 2012 - ASBMB
Using enrichment strategies many research groups are routinely producing large data sets
of post-translationally modified peptides for proteomic analysis using tandem mass …

The effect of sodium butyrate on histone modification

L Sealy, R Chalkley - Cell, 1978 - cell.com
The hyperacetylation of histones due to treatment of cultured cells wlth sodium butyrate has
been studied. The hyperacetylation is due to Inhibition of histone deacetylase. Other short …

[HTML][HTML] O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry

K Vosseller, JC Trinidad, RJ Chalkley… - Molecular & Cellular …, 2006 - ASBMB
O-GlcNAc is a widespread dynamic carbohydrate modification of cytosolic and nuclear
proteins with features analogous to phosphorylation. O-GlcNAc acts critically in many cellular …

[HTML][HTML] Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography

KC Hansen, G Schmitt-Ulms, RJ Chalkley… - Molecular & Cellular …, 2003 - ASBMB
In order to identify and compare the protein content of very low quantity samples of high
complexity, a protocol has been established that combines the differential profiling strength of a …

[HTML][HTML] Molecular high-grade B-cell lymphoma: defining a poor-risk group that requires different approaches to therapy

…, R Uddin, L Worrillow, R Chalkley… - Journal of Clinical …, 2019 - ncbi.nlm.nih.gov
Purpose Biologic heterogeneity is a feature of diffuse large B-cell lymphoma (DLBCL), and
the existence of a subgroup with poor prognosis and phenotypic proximity to Burkitt …

Phosphoenolpyruvate carboxykinase is necessary for the integration of hepatic energy metabolism

P She, M Shiota, KD Shelton, R Chalkley… - … and cellular biology, 2000 - Taylor & Francis
We used an allelogenic Cre/loxP gene targeting strategy in mice to determine the role of
cytosolic phosphoenolpyruvate carboxykinase (PEPCK) in hepatic energy metabolism. Mice …