Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
We report the sequences of 1,244 human Y chromosomes randomly ascertained from 26
worldwide populations by the 1000 Genomes Project. We discovered more than 65,000 …
worldwide populations by the 1000 Genomes Project. We discovered more than 65,000 …
The variant call format and VCFtools
…, E Banks, MA DePristo, RE Handsaker… - …, 2011 - academic.oup.com
The variant call format (VCF) is a generic format for storing DNA polymorphism data such as
SNPs, insertions, deletions and structural variants, together with rich annotations. VCF is …
SNPs, insertions, deletions and structural variants, together with rich annotations. VCF is …
[HTML][HTML] An integrated map of structural variation in 2,504 human genomes
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …
nucleotides among human genomes. Here we describe an integrated set of eight structural …
[HTML][HTML] Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence
G Genovese, AK Kähler, RE Handsaker… - … England Journal of …, 2014 - Mass Medical Soc
Background Cancers arise from multiple acquired mutations, which presumably occur over
many years. Early stages in cancer development might be present years before cancers …
many years. Early stages in cancer development might be present years before cancers …
Schizophrenia risk from complex variation of complement component 4
…, V Van Doren, G Genovese, SA Rose, RE Handsaker… - Nature, 2016 - nature.com
Schizophrenia is a heritable brain illness with unknown pathogenic mechanisms.
Schizophrenia’s strongest genetic association at a population level involves variation in the major …
Schizophrenia’s strongest genetic association at a population level involves variation in the major …
Mapping copy number variation by population-scale genome sequencing
Genomic structural variants (SVs) are abundant in humans, differing from other forms of
variation in extent, origin and functional impact. Despite progress in SV characterization, the …
variation in extent, origin and functional impact. Despite progress in SV characterization, the …
SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap
The interpretation of genome-wide association results is confounded by linkage disequilibrium
between nearby alleles. We have developed a flexible bioinformatics query tool for single-…
between nearby alleles. We have developed a flexible bioinformatics query tool for single-…
[HTML][HTML] Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
Phytophthora infestans is the most destructive pathogen of potato and a model organism for
the oomycetes, a distinct lineage of fungus-like eukaryotes that are related to organisms …
the oomycetes, a distinct lineage of fungus-like eukaryotes that are related to organisms …
A systematic survey of loss-of-function variants in human protein-coding genes
Genome-sequencing studies indicate that all humans carry many genetic variants predicted
to cause loss of function (LoF) of protein-coding genes, suggesting unexpected redundancy …
to cause loss of function (LoF) of protein-coding genes, suggesting unexpected redundancy …
Whole genome sequencing in psychiatric disorders: the WGSPD consortium
As technology advances, whole genome sequencing (WGS) is likely to supersede other
genotyping technologies. The rate of this change depends on its relative cost and utility. …
genotyping technologies. The rate of this change depends on its relative cost and utility. …