In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

Ontologies have long been employed in the life sciences to formally represent and reason
over domain knowledge and they are employed in almost every major biological database. …

Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global,
community-driven effort to evaluate and improve the computational annotation of protein …

Motivation A large number of protein sequences are becoming available through the
application of novel high-throughput sequencing technologies. Experimental functional …

The use of model organisms to provide information on gene function has proved to be a
powerful approach to our understanding of both human disease and fundamental mammalian …

… Maxat Kulmanov, Robert Hoehndorf, DeepGOPlus: improved protein function prediction
from … per second using a single Intel(R) Xeon(R) E5-2680 CPU and Nvidia P6000 GPU. …

Ontologies are widely used in biological and biomedical research. Their success lies in their
combination of four main features present in almost all ontologies: provision of standard …

The Semanticscience Integrated Ontology (SIO) is an ontology to facilitate biomedical knowledge
discovery. SIO features a simple upper level comprised of essential types and relations …

The construction of high capacity data sharing networks to support increasing government
and commercial data exchange has highlighted a key roadblock: the content of existing …

… , where P is characterized by the ontology classes Cl(P) = P 1 ,...,P n and R is
characterized by the classes Cl(R) = R 1 ,...,R m , we define the similarity between P and R as: …