[HTML][HTML] Sigma and RNA polymerase: an on-again, off-again relationship?
RA Mooney, SA Darst, R Landick - Molecular cell, 2005 - cell.com
In bacteria, a fundamental level of gene regulation occurs by competitive association of
promoter-specificity factors called σs with RNA polymerase (RNAP). This σ cycle paradigm …
promoter-specificity factors called σs with RNA polymerase (RNAP). This σ cycle paradigm …
Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators
RA Mooney, K Schweimer, P Rösch… - Journal of molecular …, 2009 - Elsevier
NusG is a conserved regulatory protein that interacts with elongation complexes (ECs) of RNA
polymerase, DNA, and RNA to modulate transcription in multiple and sometimes opposite …
polymerase, DNA, and RNA to modulate transcription in multiple and sometimes opposite …
[PDF][PDF] Structural basis for transcript elongation control by NusG family universal regulators
JY Kang, RA Mooney, Y Nedialkov, J Saba… - Cell, 2018 - cell.com
NusG/RfaH/Spt5 transcription elongation factors are the only transcription regulators conserved
across all life. Bacterial NusG regulates RNA polymerase (RNAP) elongation complexes …
across all life. Bacterial NusG regulates RNA polymerase (RNAP) elongation complexes …
[PDF][PDF] RNA polymerase accommodates a pause RNA hairpin by global conformational rearrangements that prolong pausing
Sequence-specific pausing by RNA polymerase (RNAP) during transcription plays crucial and
diverse roles in gene expression. In bacteria, RNA structures are thought to fold within the …
diverse roles in gene expression. In bacteria, RNA structures are thought to fold within the …
Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts
10.7554/eLife.34823.001 Fidaxomicin (Fdx) is an antimicrobial RNA polymerase (RNAP)
inhibitor highly effective against Mycobacterium tuberculosis RNAP in vitro, but clinical use of …
inhibitor highly effective against Mycobacterium tuberculosis RNAP in vitro, but clinical use of …
Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation
RA Mooney, I Artsimovitch, R Landick - Journal of Bacteriology, 1998 - Am Soc Microbiol
The primary function of RNA polymerase (RNAP) is to produce RNA transcripts optimal for a
given environmental or developmental state of a cell. RNAP accomplishes this selection by …
given environmental or developmental state of a cell. RNAP accomplishes this selection by …
The elemental mechanism of transcriptional pausing
…, TV Mishanina, D Nayak, TA Windgassen, RA Mooney… - Elife, 2019 - elifesciences.org
10.7554/eLife.40981.001 Transcriptional pausing underlies regulation of cellular RNA
biogenesis. A consensus pause sequence that acts on RNA polymerases (RNAPs) from bacteria …
biogenesis. A consensus pause sequence that acts on RNA polymerases (RNAPs) from bacteria …
Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation
…, S Grimm, MM Rudolph, H Keller, RA Mooney… - Elife, 2017 - elifesciences.org
10.7554/eLife.21297.001 In bacteria, the regulation of gene expression by cis-acting
transcriptional riboswitches located in the 5'-untranslated regions of messenger RNA requires the …
transcriptional riboswitches located in the 5'-untranslated regions of messenger RNA requires the …
[HTML][HTML] Life times of metastable states guide regulatory signaling in transcriptional riboswitches
C Helmling, DP Klötzner, F Sochor, RA Mooney… - Nature …, 2018 - nature.com
Transcriptional riboswitches modulate downstream gene expression by a tight coupling of
ligand-dependent RNA folding kinetics with the rate of transcription. RNA folding pathways …
ligand-dependent RNA folding kinetics with the rate of transcription. RNA folding pathways …
Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase
TA Windgassen, RA Mooney, D Nayak… - Nucleic acids …, 2014 - academic.oup.com
The conformational dynamics of the polymorphous trigger loop (TL) in RNA polymerase (RNAP)
underlie multiple steps in the nucleotide addition cycle and diverse regulatory …
underlie multiple steps in the nucleotide addition cycle and diverse regulatory …