Generation of knock-in primary human T cells using Cas9 ribonucleoproteins

…, M Subramaniam, RE Gate… - Proceedings of the …, 2015 - National Acad Sciences
T-cell genome engineering holds great promise for cell-based therapies for cancer, HIV,
primary immune deficiencies, and autoimmune diseases, but genetic manipulation of human T …

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka… - Nature …, 2018 - nature.com
Over 90% of genetic variants associated with complex human traits map to non-coding regions,
but little is understood about how they modulate gene regulation in health and disease. …

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

…, E Wan, S Wong, L Byrnes, CM Lanata, RE Gate… - Nature …, 2018 - nature.com
Droplet single-cell RNA-sequencing (dscRNA-seq) has enabled rapid, massively parallel
profiling of transcriptomes. However, assessing differential expression across multiple …

[HTML][HTML] CRISPR/Cas9-mediated PD-1 disruption enhances anti-tumor efficacy of human chimeric antigen receptor T cells

LJ Rupp, K Schumann, KT Roybal, RE Gate, CJ Ye… - Scientific reports, 2017 - nature.com
Immunotherapies with chimeric antigen receptor (CAR) T cells and checkpoint inhibitors (including
antibodies that antagonize programmed cell death protein 1 [PD-1]) have both …

Discovery of stimulation-responsive immune enhancers with CRISPR activation

…, NL Bray, AY Chan, DS Lituiev, ML Nguyen, RE Gate… - Nature, 2017 - nature.com
The majority of genetic variants associated with common human diseases map to enhancers,
non-coding elements that shape cell-type-specific transcriptional programs and responses …

A tissue checkpoint regulates type 2 immunity

…, AB Molofsky, HE Liang, JL Pollack, RE Gate… - Nature …, 2016 - nature.com
Group 2 innate lymphoid cells (ILC2s) and CD4 + type 2 helper T cells (T H 2 cells) are defined
by their similar effector cytokines, which together mediate the features of allergic immunity…

Functional CRISPR dissection of gene networks controlling human regulatory T cell identity

…, DR Simeonov, DN Nguyen, S Targ, RE Gate… - Nature …, 2020 - nature.com
Human regulatory T (T reg ) cells are essential for immune homeostasis. The transcription
factor FOXP3 maintains T reg cell identity, yet the complete set of key transcription factors that …

[PDF][PDF] A calmodulin C-lobe Ca2+-dependent switch governs Kv7 channel function

…, F Abderemane-Ali, GL Hura, ND Rossen, RE Gate… - Neuron, 2018 - cell.com
Kv7 (KCNQ) voltage-gated potassium channels control excitability in the brain, heart, and
ear. Calmodulin (CaM) is crucial for Kv7 function, but how this calcium sensor affects activity …

Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting

…, SD Axen, E Caceres, W Chen, A Cuesta, RE Gate… - Elife, 2016 - elifesciences.org
10.7554/eLife.15802.001 Ubiquitin is essential for eukaryotic life and varies in only 3 amino
acid positions between yeast and humans. However, recent deep sequencing studies …

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

CJ Ye, J Chen, AC Villani, RE Gate… - Genome …, 2018 - genome.cshlp.org
While genetic variants are known to be associated with overall gene abundance in stimulated
immune cells, less is known about their effects on alternative isoform usage. By analyzing …