GlyGen: computational and informatics resources for glycoscience

…, R Mousavi, S Nakarakommula, R Navelkar… - …, 2020 - academic.oup.com
Methods to obtain data relevant to glycobiology are rapidly evolving, thereby providing
enormous opportunities to significantly increase knowledge, insight, and understanding in this …

GlyGen data model and processing workflow

R Kahsay, J Vora, R Navelkar, R Mousavi… - …, 2020 - academic.oup.com
Glycoinformatics plays a major role in glycobiology research, and the development of a
comprehensive glycoinformatics knowledgebase is critical. This application note describes the …

Bioinformatics tools developed to support BioCompute Objects

…, A Golikov, P Brooks, R Kahsay, R Navelkar… - Database, 2021 - academic.oup.com
Developments in high-throughput sequencing (HTS) result in an exponential increase in the
amount of data generated by sequencing experiments, an increase in the complexity of …

The Glycan Structure Dictionary—a dictionary describing commonly used glycan structure terms

J Vora, R Navelkar, K Vijay-Shanker, N Edwards… - …, 2023 - academic.oup.com
Recent technological advances in glycobiology have resulted in a large influx of data and
the publication of many papers describing discoveries in glycoscience. However, the terms …

Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen

R Navelkar, G Owen, V Mutherkrishnan… - …, 2021 - academic.oup.com
Glycans play a vital role in health, disease, bioenergy, biomaterials and bio-therapeutics. As
a result, there is keen interest to identify and increase glycan data in bioinformatics …

GlyGen collaborations with NCBI to enhance glycoscientist interactions with PubChem and RefSeq

R Navelkar, J Vora, N Edwards, P Thiessen… - GLYCOBIOLOGY, 2020 - glygen.org
• This work was supported in part by the Intramural Research Program of the National
Library of Medicine, National Institutes of Health.

Metagenomic analysis of microbial dark matter in healthy human gut microbiome

Y Ren - 2019 - search.proquest.com
As the most abundant life form on earth, microorganisms have a significant impact on the
environment and human health. However, it is thought that more than 99% of these …

Expression Analysis to Identify a Set of Genes for the Improvement of RNA-Seq Data Normalization

R Mousavi - 2019 - search.proquest.com
Categorizing protein-coding genes and understanding their expression patterns is expected
to provide insight into complex regulatory networks. This can result in the identification of …

[HTML][HTML] Comprehensive Analysis of Glycosyltransferases in Cancer Identified from a Multifaceted Genomics Approach

HM Dingerdissen - 2021 - search.proquest.com
Rahi Navelkar for glycobiology discussions and guidance; special acknowledgment to Ned
Cauley and Jonny Torcivia for help with BioXpress and scripting; past labmates Yu Hu, Yu …

OncoMX: a knowledgebase for exploring cancer biomarkers in the context of related cancer and healthy data

HM Dingerdissen, F Bastian… - JCO clinical cancer …, 2020 - ascopubs.org
… ; Edmund Cauley and Daniel Lyman for manuscript review; and Jeet Kiran Vora and Rahi
Navelkar for thoughtful discussion regarding data set maintenance and related considerations. …