User profiles for Raul Catena
Raul CatenaVisiting Scientist, IBM Research Verified email at zurich.ibm.com Cited by 3340 |
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data
Single-cell, spatially resolved omics analysis of tissues is poised to transform biomedical
research and clinical practice. We have developed an open-source, computational histology …
research and clinical practice. We have developed an open-source, computational histology …
Myeloid progenitor cells in the premetastatic lung promote metastases by inducing mesenchymal to epithelial transition
Tumors systemically initiate metastatic niches in distant target metastatic organs. These
niches, composed of bone marrow–derived hematopoietic cells, provide permissive conditions …
niches, composed of bone marrow–derived hematopoietic cells, provide permissive conditions …
[HTML][HTML] Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment
A holistic understanding of tissue and organ structure and function requires the detection of
molecular constituents in their original three-dimensional (3D) context. Imaging mass …
molecular constituents in their original three-dimensional (3D) context. Imaging mass …
Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes
CRISPR-Cas9 enables efficient sequence-specific mutagenesis for creating somatic or germline
mutants of model organisms. Key constraints in vivo remain the expression and delivery …
mutants of model organisms. Key constraints in vivo remain the expression and delivery …
Alternative splicing: an emerging topic in molecular and clinical oncology
MJ Pajares, T Ezponda, R Catena, A Calvo… - The lancet …, 2007 - thelancet.com
Alternative pre-mRNA splicing is a key molecular event that allows for protein diversity.
Through this process, a single gene increases its coding capacity by expressing several related …
Through this process, a single gene increases its coding capacity by expressing several related …
Lung inflammation promotes metastasis through neutrophil protease-mediated degradation of Tsp-1
T El Rayes, R Catena, S Lee… - Proceedings of the …, 2015 - National Acad Sciences
Inflammation is inextricably associated with primary tumor progression. However, the contribution
of inflammation to tumor outgrowth in metastatic organs has remained underexplored. …
of inflammation to tumor outgrowth in metastatic organs has remained underexplored. …
[PDF][PDF] Suppression of miRNA-708 by polycomb group promotes metastases by calcium-induced cell migration
The progression of cancer to metastatic disease is a major cause of death. We identified miR-708
being transcriptionally repressed by polycomb repressor complex 2-induced H3K27 …
being transcriptionally repressed by polycomb repressor complex 2-induced H3K27 …
Bone Marrow–Derived Gr1+ Cells Can Generate a Metastasis-Resistant Microenvironment Via Induced Secretion of Thrombospondin-1
Metastatic tumors have been shown to establish permissive microenvironments for
metastases via recruitment of bone marrow–derived cells. Here, we show that metastasis-…
metastases via recruitment of bone marrow–derived cells. Here, we show that metastasis-…
VEGF elicits epithelial-mesenchymal transition (EMT) in prostate intraepithelial neoplasia (PIN)-like cells via an autocrine loop
Vascular endothelial growth factor (VEGF) is overexpressed during the transition from prostate
intraepithelial neoplasia (PIN) to invasive carcinoma. We have mimicked such a process …
intraepithelial neoplasia (PIN) to invasive carcinoma. We have mimicked such a process …
[HTML][HTML] VEGF121b and VEGF165b are weakly angiogenic isoforms of VEGF-A
Background Different isoforms of VEGF-A (mainly VEGF 121 , VEGF 165 and VEGF 189 )
have been shown to display particular angiogenic properties in the generation of a functional …
have been shown to display particular angiogenic properties in the generation of a functional …