Non-coding recurrent mutations in chronic lymphocytic leukaemia

…, P Jares, M Aymerich, T Baumann, R Beekman… - Nature, 2015 - nature.com
Chronic lymphocytic leukaemia (CLL) is a frequent disease in which the genetic alterations
determining the clinicobiological behaviour are not fully understood. Here we describe a …

The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia

R Beekman, V Chapaprieta, N Russiñol… - Nature medicine, 2018 - nature.com
Chronic lymphocytic leukemia (CLL) is a frequent hematological neoplasm in which
underlying epigenetic alterations are only partially understood. Here, we analyze the reference …

The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome

M Duran-Ferrer, G Clot, F Nadeu, R Beekman… - Nature Cancer, 2020 - nature.com
We report a systematic analysis of the DNA methylation variability in 1,595 samples of normal
cell subpopulations and 14 tumor subtypes spanning the entire human B-cell lineage. …

Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer

M Kulis, AC Queirós, R Beekman… - Biochimica et Biophysica …, 2013 - Elsevier
Ever since the discovery of DNA methylation at cytosine residues, the role of this so called
fifth base has been extensively studied and debated. Until recently, the majority of DNA …

Sequential gain of mutations in severe congenital neutropenia progressing to acute myeloid leukemia

R Beekman, MG Valkhof, MA Sanders… - Blood, The Journal …, 2012 - ashpublications.org
Severe congenital neutropenia (SCN) is a BM failure syndrome with a high risk of progression
to acute myeloid leukemia (AML). The underlying genetic changes involved in SCN …

Whole-genome fingerprint of the DNA methylome during human B cell differentiation

…, AC Queirós, RP Schuyler, G Castellano, R Beekman… - Nature …, 2015 - nature.com
We analyzed the DNA methylome of ten subpopulations spanning the entire B cell differentiation
program by whole-genome bisulfite sequencing and high-density microarrays. We …

G-CSF and its receptor in myeloid malignancy

R Beekman, IP Touw - Blood, The Journal of the American …, 2010 - ashpublications.org
Granulocyte colony-stimulating factor (G-CSF) has been used in the clinic for more than 2
decades to treat congenital and acquired neutropenias and to reduce febrile neutropenia …

Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers

…, A Datta, N Russiñol, AC Queirós, R Beekman… - Genome …, 2015 - genome.cshlp.org
While analyzing the DNA methylome of multiple myeloma (MM), a plasma cell neoplasm, by
whole-genome bisulfite sequencing and high-density arrays, we observed a highly …

[PDF][PDF] Decoding the DNA methylome of mantle cell lymphoma in the light of the entire B cell lineage

AC Queiros, R Beekman, R Vilarrasa-Blasi… - Cancer cell, 2016 - cell.com
We analyzed the in silico purified DNA methylation signatures of 82 mantle cell lymphomas (MCL)
in comparison with cell subpopulations spanning the entire B cell lineage. We …

[HTML][HTML] Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas

…, O Ammerpohl, SM Aukema, R Beekman… - Leukemia, 2021 - nature.com
B cells have the unique property to somatically alter their immunoglobulin (IG) genes by V(D)J
recombination, somatic hypermutation (SHM) and class-switch recombination (CSR). …