User profiles for Rex R Malmstrom

Rex R Malmstrom

Staff Scientist / Director Microscale Applications Research Group; DOE Joint Genome …
Verified email at lbl.gov
Cited by 9476

[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

…, A Copeland, A Clum, ED Becraft, RR Malmstrom… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

…, A Coe, H Ding, P Marttinen, RR Malmstrom, R Stocker… - Science, 2014 - science.org
Extensive genomic diversity within coexisting members of a microbial species has been
revealed through selected cultured isolates and metagenomic assemblies. Yet, the cell-by-cell …

[HTML][HTML] Minimum information about an uncultivated virus genome (MIUViG)

…, JM Labonté, KB Lee, RR Malmstrom… - Nature …, 2019 - nature.com
We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard
for reporting sequences of uncultivated virus genomes. Minimum Information about an …

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

…, Y Shi, CR Young, RR Malmstrom… - Proceedings of the …, 2010 - National Acad Sciences
Marine dissolved organic matter (DOM) contains as much carbon as the Earth's atmosphere,
and represents a critical component of the global carbon cycle. To better define microbial …

[HTML][HTML] Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

S Rodrigue, RR Malmstrom, AM Berlin, BW Birren… - PloS one, 2009 - journals.plos.org
Background Single-cell genome sequencing has the potential to allow the in-depth
exploration of the vast genetic diversity found in uncultured microbes. We used the marine …

[HTML][HTML] The epigenomic landscape of prokaryotes

…, R Fries, J Froula, DD Kang, RR Malmstrom… - PLoS …, 2016 - journals.plos.org
DNA methylation acts in concert with restriction enzymes to protect the integrity of prokaryotic
genomes. Studies in a limited number of organisms suggest that methylation also …

Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean

RR Malmstrom, RP Kiene, MT Cottrell… - Applied and …, 2004 - Am Soc Microbiol
SAR11 bacteria are abundant in marine environments, often accounting for 35% of total
prokaryotes in the surface ocean, but little is known about their involvement in marine …

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

RR Malmstrom, A Coe, GC Kettler, AC Martiny… - The ISME …, 2010 - academic.oup.com
To better understand the temporal and spatial dynamics of Prochlorococcus populations,
and how these populations co-vary with the physical environment, we followed monthly …

[HTML][HTML] Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

…, K Anantharaman, BC Thomas, RR Malmstrom… - Nature …, 2018 - nature.com
An enormous diversity of previously unknown bacteria and archaea has been discovered
recently, yet their functional capacities and distributions in the terrestrial subsurface remain …

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

…, RJ Newton, KD McMahon, RR Malmstrom - The ISME …, 2016 - academic.oup.com
Multiple models describe the formation and evolution of distinct microbial phylogenetic
groups. These evolutionary models make different predictions regarding how adaptive alleles …