User profiles for Rex R Malmstrom
Rex R MalmstromStaff Scientist / Director Microscale Applications Research Group; DOE Joint Genome … Verified email at lbl.gov Cited by 9476 |
[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
Extensive genomic diversity within coexisting members of a microbial species has been
revealed through selected cultured isolates and metagenomic assemblies. Yet, the cell-by-cell …
revealed through selected cultured isolates and metagenomic assemblies. Yet, the cell-by-cell …
[HTML][HTML] Minimum information about an uncultivated virus genome (MIUViG)
…, JM Labonté, KB Lee, RR Malmstrom… - Nature …, 2019 - nature.com
We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard
for reporting sequences of uncultivated virus genomes. Minimum Information about an …
for reporting sequences of uncultivated virus genomes. Minimum Information about an …
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
…, Y Shi, CR Young, RR Malmstrom… - Proceedings of the …, 2010 - National Acad Sciences
Marine dissolved organic matter (DOM) contains as much carbon as the Earth's atmosphere,
and represents a critical component of the global carbon cycle. To better define microbial …
and represents a critical component of the global carbon cycle. To better define microbial …
[HTML][HTML] Whole Genome Amplification and De novo Assembly of Single Bacterial Cells
Background Single-cell genome sequencing has the potential to allow the in-depth
exploration of the vast genetic diversity found in uncultured microbes. We used the marine …
exploration of the vast genetic diversity found in uncultured microbes. We used the marine …
[HTML][HTML] The epigenomic landscape of prokaryotes
…, R Fries, J Froula, DD Kang, RR Malmstrom… - PLoS …, 2016 - journals.plos.org
DNA methylation acts in concert with restriction enzymes to protect the integrity of prokaryotic
genomes. Studies in a limited number of organisms suggest that methylation also …
genomes. Studies in a limited number of organisms suggest that methylation also …
Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
SAR11 bacteria are abundant in marine environments, often accounting for 35% of total
prokaryotes in the surface ocean, but little is known about their involvement in marine …
prokaryotes in the surface ocean, but little is known about their involvement in marine …
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
To better understand the temporal and spatial dynamics of Prochlorococcus populations,
and how these populations co-vary with the physical environment, we followed monthly …
and how these populations co-vary with the physical environment, we followed monthly …
[HTML][HTML] Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
An enormous diversity of previously unknown bacteria and archaea has been discovered
recently, yet their functional capacities and distributions in the terrestrial subsurface remain …
recently, yet their functional capacities and distributions in the terrestrial subsurface remain …
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
Multiple models describe the formation and evolution of distinct microbial phylogenetic
groups. These evolutionary models make different predictions regarding how adaptive alleles …
groups. These evolutionary models make different predictions regarding how adaptive alleles …