Although similar integrative tools exist (Supplementary Note 2), no other open platform
shares all KBase’s features, which include the following:(i) comprehensive support for data …

A review of the basic structure of microbial biofilm reveals that at least three conceptual
models exist: (i) heterogeneous mosaic biofilm, (ii) penetrated water-channel biofilm and (iii) …

The US Department of Energy Systems Biology Knowledgebase (KBase) is an open-source
software and data platform designed to meet the grand challenge of systems biology — …

Study objectives To explore the flow and time domain characteristics of resting tidal airflow
profiles in the presence of obstructive airway disease. Methods Spirometry was performed on …

Background Gene fusions are the most powerful type of in silico-derived functional associations.
However, many fusion compilations were made when <100 genomes were available, …

In this note we respond to comments made by Van Loosdrecht and colleagues regarding
our unifying hypothesis for biofilm formation. We concur with much of what the authors state; …

To illuminate mechanisms supporting diversity in plant communities, we construct 2D cellular
automata and ‘grow’ virtual plants in real experiments. The plants are 19 different, fully …

Genome-scale metabolic models are valuable tools in the metabolic engineering process,
based on the ability of these models to integrate diverse sources of data to produce global …

In this paper we investigate the role that landscape connectivity plays in facilitating plant
invasions. Our goal was to describe the effect of local and long-distance dispersal on population …

… The expression of the wide variety of effects in biological systems is achieved through the
interaction of NO with target (macro)molecules by way of a ric h redox and additive chemistry. …