User profiles for Ricardo Assunção Vialle

Ricardo Assunção Vialle

Rush Alzheimer's Disease Center
Verified email at rush.edu
Cited by 402

Alignment modulates ancestral sequence reconstruction accuracy

RA Vialle, AU Tamuri, N Goldman - Molecular biology and …, 2018 - academic.oup.com
Accurate reconstruction of ancestral states is a critical evolutionary analysis when studying
ancient proteins and comparing biochemical properties between parental or extinct species …

Whole Genome Sequencing of the Pirarucu (Arapaima gigas) Supports Independent Emergence of Major Teleost Clades

RA Vialle, JES de Souza, KP Lopes… - Genome biology and …, 2018 - academic.oup.com
The Pirarucu (Arapaima gigas) is one of the world’s largest freshwater fishes and member
of the superorder Osteoglossomorpha (bonytongues), one of the oldest lineages of ray-finned …

[HTML][HTML] Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage

KP Lopes, T Vinasco-Sandoval, RA Vialle… - Scientific reports, 2018 - nature.com
The molecular mechanisms behind aneurysmal subarachnoid haemorrhage (aSAH) are
still poorly understood. Expression patterns of miRNAs may help elucidate the post-…

[HTML][HTML] Comprehensive analysis of germline mutations in northern Brazil: a panel of 16 genes for hereditary cancer-predisposing syndrome investigation

…, PP de Assumpção, LM de Brito, RA Vialle… - BMC cancer, 2021 - Springer
Background Next generation sequencing (NGS) has been a handy tool in clinical practice,
mainly due to its efficiency and cost-effectiveness. It has been widely used in genetic …

RAFTS3: Rapid alignment-free tool for sequence similarity search

RA Vialle, F Oliveira Pedrosa, VA Weiss, D Guizelini… - BioRxiv, 2016 - biorxiv.org
Background Similarity search of a given protein sequence against a database is an essential
task in genome analysis. Sequence alignment is the most used method to perform such …

[HTML][HTML] Role of miRNAs in sigmoid colon cancer: A search for potential biomarkers

…, T Vinasco-Sandoval, KP Lopes, RA Vialle… - Cancers, 2020 - mdpi.com
Simple Summary Understanding the microRNAs’ role in cancer is challenging, because, in
the most cases, the only tissues available are the tumor and its counterpart, the adjacent-to-…

[HTML][HTML] Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes

KP Lopes, FJ Campos-Laborie, RA Vialle, JM Ortega… - BMC genomics, 2016 - Springer
Background The development of large-scale technologies for quantitative transcriptomics
has enabled comprehensive analysis of the gene expression profiles in complete genomes. …

[HTML][HTML] RAFTS3G: an efficient and versatile clustering software to analyses in large protein datasets

…, CR de Pierri, LGC Santos, AQ Lejambre, RA Vialle… - BMC …, 2019 - Springer
Background Clustering methods are essential to partitioning biological samples being
useful to minimize the information complexity in large datasets. Tools in this context usually …

Betacoronaviruses genome analysis reveals evolution toward specific codons usage: Implications for SARS‐CoV‐2 mitigation strategies

…, S Tosta, Á Salgado, R Assunção Vialle… - Journal of Medical …, 2021 - Wiley Online Library
Since the start of the coronavirus disease 2019 (COVID‐19) pandemic, the severe acute
respiratory syndrome coronavirus 2 (SARS‐CoV‐2) has rapidly widespread worldwide …

Evolutionary hallmarks of the human proteome: Chasing the age and coregulation of protein-coding genes

K Paiva Lopes, FJ Campos-Laborie, R Assunção Vialle… - 2016 - digital.csic.es
[Background]: The development of large-scale technologies for quantitative transcriptomics
has enabled comprehensive analysis of the gene expression profiles in complete genomes. …