Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
…, J Chase, EK Cope, R Da Silva… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …
past two decades have substantially improved understanding of the microbial world. This …
Feature-based molecular networking in the GNPS analysis environment
…, X Cachet, AM Caraballo-Rodriguez, RR Da Silva… - Nature …, 2020 - nature.com
Molecular networking has become a key method to visualize and annotate the chemical space
in non-targeted mass spectrometry data. We present feature-based molecular networking …
in non-targeted mass spectrometry data. We present feature-based molecular networking …
[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
…, J Chase, E Cope, R Da Silva… - 2018 - peerj.com
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …
Illuminating the dark matter in metabolomics
RR da Silva, PC Dorrestein… - Proceedings of the …, 2015 - National Acad Sciences
Despite the over 100-y history of mass spectrometry, it remains challenging to link the large
volume of known chemical structures to the data obtained with mass spectrometers. Presently…
volume of known chemical structures to the data obtained with mass spectrometers. Presently…
Smart thermoresponsive coatings and surfaces for tissue engineering: switching cell-material boundaries
The smart thermoresponsive coatings and surfaces that have been explicitly designed for
cell culture are mostly based on poly(N-isopropylacrylamide) (PNIPAAm). This polymer is …
cell culture are mostly based on poly(N-isopropylacrylamide) (PNIPAAm). This polymer is …
Global chemical effects of the microbiome include new bile-acid conjugations
A mosaic of cross-phylum chemical interactions occurs between all metazoans and their
microbiomes. A number of molecular families that are known to be produced by the microbiome …
microbiomes. A number of molecular families that are known to be produced by the microbiome …
[HTML][HTML] Propagating annotations of molecular networks using in silico fragmentation
The annotation of small molecules is one of the most challenging and important steps in
untargeted mass spectrometry analysis, as most of our biological interpretations rely on …
untargeted mass spectrometry analysis, as most of our biological interpretations rely on …
Bioactivity-based molecular networking for the discovery of drug leads in natural product bioassay-guided fractionation
…, M Nothias-Esposito, R Da Silva… - Journal of natural …, 2018 - ACS Publications
… Ricardo da Silva Ricardo da Silva … between two precursor ions would suggest a putative
CH 2 increment, a difference of 16 Da on oxygenation, while a difference of 34 Da in the …
CH 2 increment, a difference of 16 Da on oxygenation, while a difference of 34 Da in the …
[HTML][HTML] Conventional rotator cuff repair complemented by the aid of mononuclear autologous stem cells
JL Ellera Gomes, RC Da Silva, LMR Silla… - Knee Surgery, Sports …, 2012 - Springer
Purpose To investigate the behavior of rotator cuff tears treated with conventional repair
technique with the aid of autologous bone marrow mononuclear cells (BMMC). Methods …
technique with the aid of autologous bone marrow mononuclear cells (BMMC). Methods …
Global chemical analysis of biology by mass spectrometry
Mass spectrometry instruments measure the mass to charge ratio of ions, from which we
infer the molecular structures. They are key tools for investigating the incredibly diverse …
infer the molecular structures. They are key tools for investigating the incredibly diverse …