User profiles for Richard A Neher
Richard NeherBiozentrum, University of Basel Verified email at unibas.ch Cited by 14191 |
Nextstrain: real-time tracking of pathogen evolution
… Richard A Neher … The authors wish it to be known that, in their opinion, the Trevor
Bedford and Richard A. Neher authors should be regarded as Joint last Authors. …
Bedford and Richard A. Neher authors should be regarded as Joint last Authors. …
[PDF][PDF] Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
The novel coronavirus SARS-CoV-2 was first detected in the Pacific Northwest region of the
United States in January 2020, with subsequent COVID-19 outbreaks detected in all 50 …
United States in January 2020, with subsequent COVID-19 outbreaks detected in all 50 …
Cryptic transmission of SARS-CoV-2 in Washington state
After its emergence in Wuhan, China, in late November or early December 2019, the severe
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. …
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. …
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
There is obvious interest in gaining insights into the epidemiology and evolution of the virus
that has recently emerged in humans as the cause of the coronavirus disease 2019 (COVID-…
that has recently emerged in humans as the cause of the coronavirus disease 2019 (COVID-…
[PDF][PDF] Nextclade: clade assignment, mutation calling and quality control for viral genomes
The variants of concern (VoCs) of SARS-CoV-2 have highlighted the need for a global molecular
surveillance of pathogens via whole genome sequencing. Such sequencing, for SARS-…
surveillance of pathogens via whole genome sequencing. Such sequencing, for SARS-…
[HTML][HTML] Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
Following its emergence in late 2019, the spread of SARS-CoV-2 1 , 2 has been tracked by
phylogenetic analysis of viral genome sequences in unprecedented detail 3 , 4 – 5 . …
phylogenetic analysis of viral genome sequences in unprecedented detail 3 , 4 – 5 . …
TreeTime: Maximum-likelihood phylodynamic analysis
Mutations that accumulate in the genome of cells or viruses can be used to infer their
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their detailed …
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their detailed …
[HTML][HTML] Novel SARS-CoV-2 variants: the pandemics within the pandemic
Background Many new variants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
have been termed variants of concern/interest (VOC/I) because of the greater risk …
have been termed variants of concern/interest (VOC/I) because of the greater risk …
[HTML][HTML] Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
We propose a novel, non-discriminatory classification of monkeypox virus diversity. Together
with the World Health Organization, we named three clades (I, IIa and IIb) in order of …
with the World Health Organization, we named three clades (I, IIa and IIb) in order of …
[HTML][HTML] Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
With the emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
variants that may increase transmissibility and/or cause escape from immune responses, …
variants that may increase transmissibility and/or cause escape from immune responses, …