User profiles for Rick Stevens
Rick StevensProfessor of Computer Science, University of Chicago Verified email at ci.uchicago.edu Cited by 45689 |
[HTML][HTML] The RAST Server: rapid annotations using subsystems technology
Background The number of prokaryotic genome sequences becoming available is growing
steadily and is growing faster than our ability to accurately annotate them. Description We …
steadily and is growing faster than our ability to accurately annotate them. Description We …
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
In 2004, the SEED ( http://pubseed.theseed.org/ ) was created to provide consistent and
accurate genome annotations across thousands of genomes and as a platform for discovering …
accurate genome annotations across thousands of genomes and as a platform for discovering …
[HTML][HTML] The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
Background Random community genomes (metagenomes) are now commonly used to
study microbes in different environments. Over the past few years, the major challenge …
study microbes in different environments. Over the past few years, the major challenge …
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics
Resource Center ( https://www.patricbrc.org ). Recent changes to PATRIC include a redesign of …
Resource Center ( https://www.patricbrc.org ). Recent changes to PATRIC include a redesign of …
PATRIC, the bacterial bioinformatics database and analysis resource
…, M Shukla, J Schulman, RL Stevens… - Nucleic acids …, 2014 - academic.oup.com
The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics
Resource Center (BRC) ( http://www.patricbrc.org ). A joint effort by two of the original …
Resource Center (BRC) ( http://www.patricbrc.org ). A joint effort by two of the original …
[HTML][HTML] Antimicrobial resistance prediction in PATRIC and RAST
The emergence and spread of antimicrobial resistance (AMR) mechanisms in bacterial
pathogens, coupled with the dwindling number of effective antibiotics, has created a global …
pathogens, coupled with the dwindling number of effective antibiotics, has created a global …
[HTML][HTML] A communal catalogue reveals Earth's multiscale microbial diversity
Our growing awareness of the microbial world’s importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
[HTML][HTML] RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in
2008 to annotate bacterial and archaeal genomes. It works by offering a standard software …
2008 to annotate bacterial and archaeal genomes. It works by offering a standard software …
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
The release of the 1000 th complete microbial genome will occur in the next two to three
years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) …
years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) …
Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR
…, RH Scheuermann, RL Stevens - Nucleic acids …, 2023 - academic.oup.com
The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics
Resource Center (BRC) program to assist researchers with analyzing the growing body …
Resource Center (BRC) program to assist researchers with analyzing the growing body …