High-resolution genetic mapping using the Mouse Diversity outbred population

KL Svenson, DM Gatti, W Valdar, CE Welsh, R Cheng… - Genetics, 2012 - academic.oup.com
The JAX Diversity Outbred population is a new mouse resource derived from partially
inbred Collaborative Cross strains and maintained by randomized outcrossing. As such, it …

Quantitative trait locus mapping methods for diversity outbred mice

…, P Simecek, N Goodwin, R Cheng… - G3: Genes …, 2014 - academic.oup.com
Genetic mapping studies in the mouse and other model organisms are used to search for
genes underlying complex phenotypes. Traditional genetic mapping studies that employ single…

[HTML][HTML] TraitCapture: genomic and environment modelling of plant phenomic data

TB Brown, R Cheng, XRR Sirault, T Rungrat… - Current opinion in plant …, 2014 - Elsevier
RiyanCheng 1 5 … Cheng, M. Abney, AA Palmer, AD Skol … Cheng, J. Borevitz, RW Doerge …

Variation in leaf respiration rates at night correlates with carbohydrate and amino acid supply

BM O'Leary, CP Lee, OK Atkin, R Cheng… - Plant …, 2017 - academic.oup.com
Plant respiration can theoretically be fueled by and dependent upon an array of central
metabolism components; however, which ones are responsible for the quantitative variation …

Genome-wide association studies and the problem of relatedness among advanced intercross lines and other highly recombinant populations

R Cheng, JE Lim, KE Samocha, G Sokoloff, M Abney… - Genetics, 2010 - academic.oup.com
Abstract Model organisms offer many advantages for the genetic analysis of complex traits.
However, identification of specific genes is often hampered by a lack of recombination …

[PDF][PDF] Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks

…, AS Chitre, O Polesskaya, K Holl, J Gao, R Cheng… - Cell reports, 2023 - cell.com
A vexing observation in genome-wide association studies (GWASs) is that parallel analyses
in different species may not identify orthologous genes. Here, we demonstrate that cross-…

[HTML][HTML] Hnrnph1 Is A Quantitative Trait Gene for Methamphetamine Sensitivity

…, SL Kirkpatrick, JE Lim, G Sokoloff, R Cheng… - PLoS …, 2015 - journals.plos.org
Psychostimulant addiction is a heritable substance use disorder; however its genetic basis
is almost entirely unknown. Quantitative trait locus (QTL) mapping in mice offers a …

[HTML][HTML] Using phenomic analysis of photosynthetic function for abiotic stress response gene discovery

T Rungrat, M Awlia, T Brown, R Cheng… - The Arabidopsis Book …, 2016 - ncbi.nlm.nih.gov
Monitoring the photosynthetic performance of plants is a major key to understanding how
plants adapt to their growth conditions. Stress tolerance traits have a high genetic complexity …

Genome‐wide association study in 3,173 outbred rats identifies multiple loci for body weight, adiposity, and fasting glucose

AS Chitre, O Polesskaya, K Holl, J Gao, R Cheng… - …, 2020 - Wiley Online Library
Objective Obesity is influenced by genetic and environmental factors. Despite the success
of human genome‐wide association studies, the specific genes that confer obesity remain …

Genetic Variation for Life History Sensitivity to Seasonal Warming in Arabidopsis thaliana

Y Li, R Cheng, KA Spokas, AA Palmer, JO Borevitz - Genetics, 2014 - academic.oup.com
Climate change has altered life history events in many plant species; however, little is known
about genetic variation underlying seasonal thermal response. In this study, we simulated …