Ecdysteroids regulate yolk protein uptake by Drosophila melanogaster oocytes

DS Richard, NL Watkins, RB Serafin… - Journal of insect …, 1998 - Elsevier
Juvenile hormones (JHs) are thought to drive the regulation of yolk protein uptake by ovaries
in Drosophila melanogaster. However, the level of JH production in a mutant stock (ap 56f ) …

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

…, LA Barner, EA Susaki, SI Kubota, G Gao, RB Serafin… - Nature …, 2022 - nature.com
Light-sheet microscopy has emerged as the preferred means for high-throughput volumetric
imaging of cleared tissues. However, there is a need for a flexible system that can address …

Direct three-dimensional segmentation of prostate glands with nnU-Net

R Wang, SSL Chow, RB Serafin, W Xie… - Journal of …, 2024 - spiedigitallibrary.org
Significance In recent years, we and others have developed non-destructive methods to
obtain three-dimensional (3D) pathology datasets of clinical biopsies and surgical specimens. …

An end-to-end workflow for nondestructive 3D pathology

…, E Baraznenok, L Lan, C Poudel, G Gao, RB Serafin… - Nature …, 2024 - nature.com
Recent advances in 3D pathology offer the ability to image orders of magnitude more tissue
than conventional pathology methods while also providing a volumetric context that is not …

Non-Orthogonal Dual-Objective (NODO) Open-Top Light-Sheet (OTLS) Microscopy for 3D Pathology of Cleared Clinical Specimens

…, AK Glaser, LA Barner, RB Serafin… - Microscopy …, 2022 - opg.optica.org
… Barner2, Robert B. Serafin2, Jonathan TC Liu1,2,3 … b) Axial sweeping principle, where
the beam waist of a moderateNA light sheet with short Rayleigh range (ZR) is scanned in …

3D pathology of cleared clinical specimens using an optimized nonorthogonal dual-objective (NODO) open-top light-sheet (OTLS) microscope (Conference …

…, AK Glaser, LA Barner, RB Serafin… - … and Processing XXX, 2023 - spiedigitallibrary.org
Open-Top Light-Sheet (OTLS) microscopy is an emerging technique for cleared-tissue imaging
that alleviates many of the physical constraints on sample size and geometry associated …

Analysis of 3D nuclear spatial architecture for prostate cancer risk stratification (Conference Presentation)

RB Serafin, V Roybal, C Koyuncu… - … and Processing XXX, 2023 - spiedigitallibrary.org
Non-destructive 3D microscopy enables the accurate characterization of diagnostically and
prognostically significant microstructures in clinical specimens with significantly increased …

A comprehensive workflow to generate 3D pathology datasets for large-scale clinical studies

…, L Lan, G Gao, RB Serafin… - … and Spectroscopy V, 2024 - spiedigitallibrary.org
Conventional pathology workflows rely on two-dimensional, slide-based analysis of thin
tissue sections. This approach comes with several key limitations including limited sampling, …

Effects of polycyclic aromatic hydrocarbons and abiotic stressors on Fundulus grandis cardiac transcriptomics

E Allmon, J Serafin, S Chen, ML Rodgers… - Science of the Total …, 2021 - Elsevier
Following the 2010 Deepwater Horizon oil spill, extensive research has been conducted on
the toxicity of oil and polycyclic aromatic hydrocarbons (PAHs) in the aquatic environment. …

The influence of hypoxia on the cardiac transcriptomes of two estuarine species-C. variegatus and F. grandis

E Allmon, J Serafin, S Chen, D Simning, R Griffitt… - … and Physiology Part D …, 2021 - Elsevier
Increased nutrient loading has led to eutrophication of coastal shelf waters which has
resulted in increased prevalence of persistent hypoxic zones – areas in which the dissolved …