User profiles for Robert P Davey
 | Robert DaveyDirector of Technology, The Carpentries Verified email at carpentries.org Cited by 3213 |
Population genomics of domestic and wild yeasts
Since the completion of the genome sequence of Saccharomyces cerevisiae in 1996 (refs 1
), there has been a large increase in complete genome sequences, accompanied by great …
), there has been a large increase in complete genome sequences, accompanied by great …
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …
…, H Gundlach, G Haberer, RP Davey… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
[HTML][HTML] Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement
Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a reservoir
of genetic diversity for improving bread wheat performance and environmental resilience…
of genetic diversity for improving bread wheat performance and environmental resilience…
[HTML][HTML] Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics
…, BJ Clavijo, D Waite, RP Davey - Frontiers in …, 2013 - frontiersin.org
The processes of quality assessment and control are an active area of research at The
Genome Analysis Centre (TGAC). Unlike other sequencing centers that often concentrate on a …
Genome Analysis Centre (TGAC). Unlike other sequencing centers that often concentrate on a …
Standards recommendations for the earth BioGenome project
A global international initiative, such as the Earth BioGenome Project (EBP), requires both
agreement and coordination on standards to ensure that the collective effort generates rapid …
agreement and coordination on standards to ensure that the collective effort generates rapid …
[HTML][HTML] LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis
Background Amplicon sequencing is an established and cost-efficient method for profiling
microbiomes. However, many available tools to process this data require both bioinformatics …
microbiomes. However, many available tools to process this data require both bioinformatics …
Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
SA James, MJT O'Kelly, DM Carter, RP Davey… - Genome …, 2009 - genome.cshlp.org
Ribosomal DNA (rDNA) plays a key role in ribosome biogenesis, encoding genes for the
structural RNA components of this important cellular organelle. These genes are vital for …
structural RNA components of this important cellular organelle. These genes are vital for …
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
Motivation: The Oxford Nanopore MinION sequencer, currently in pre-release testing
through the MinION Access Programme (MAP), promises long reads in real-time from an …
through the MinION Access Programme (MAP), promises long reads in real-time from an …
[HTML][HTML] Data management challenges for artificial intelligence in plant and agricultural research
Artificial Intelligence (AI) is increasingly used within plant science, yet it is far from being
routinely and effectively implemented in this domain. Particularly relevant to the development of …
routinely and effectively implemented in this domain. Particularly relevant to the development of …
Data management and best practice for plant science
Plant research produces data in a profusion of types and scales, and in ever-increasing
volume. What are the challenges and opportunities presented by data management in …
volume. What are the challenges and opportunities presented by data management in …