User profiles for Robert-Jan Palstra

Robert-Jan Palstra

Senior Scientist ErasmusMC
Verified email at erasmusmc.nl
Cited by 6156

CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus

E Splinter, H Heath, J Kooren, RJ Palstra… - Genes & …, 2006 - genesdev.cshlp.org
CTCF (CCCTC-binding factor) binds sites around the mouse β-globin locus that spatially
cluster in the erythroid cell nucleus. We show that both conditional deletion of CTCF and …

The active spatial organization of the β-globin locus requires the transcription factor EKLF

R Drissen, RJ Palstra, N Gillemans… - Genes & …, 2004 - genesdev.cshlp.org
Three-dimensional organization of a gene locus is important for its regulation, as recently
demonstrated for the β-globin locus. When actively expressed, the cis-regulatory elements of …

β‐globin regulation and long‐range interactions

RJ Palstra, W de Laat, F Grosveld - Advances in genetics, 2008 - Elsevier
Transcriptional activation in higher eukaryotes frequently involves the long‐range action of a
number of regulatory DNA elements. One of the main questions in transcriptional regulation …

[PDF][PDF] Looping and interaction between hypersensitive sites in the active β-globin locus

B Tolhuis, RJ Palstra, E Splinter, F Grosveld, W De Laat - Molecular cell, 2002 - cell.com
Eukaryotic transcription can be regulated over tens or even hundreds of kilobases. We
show that such long-range gene regulation in vivo involves spatial interactions between …

The β-globin nuclear compartment in development and erythroid differentiation

RJ Palstra, B Tolhuis, E Splinter, R Nijmeijer… - Nature …, 2003 - nature.com
Efficient transcription of genes requires a high local concentration of the relevant trans-acting
factors. Nuclear compartmentalization can provide an effective means to locally increase …

HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter

M Visser, M Kayser, RJ Palstra - Genome research, 2012 - genome.cshlp.org
Pigmentation of skin, eye, and hair reflects some of the most evident common phenotypes in
humans. Several candidate genes for human pigmentation are identified. The SNP …

The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation

…, S Thongjuea, R Stadhouders, RJ Palstra… - Genes & …, 2010 - genesdev.cshlp.org
One of the complexes formed by the hematopoietic transcription factor Gata1 is a complex
with the Ldb1 (LIM domain-binding protein 1) and Tal1 proteins. It is known to be important for …

Dynamic long‐range chromatin interactions control Myb proto‐oncogene transcription during erythroid development

…, S Thongjuea, C Andrieu‐Soler, RJ Palstra… - The EMBO …, 2012 - embopress.org
The key haematopoietic regulator Myb is essential for coordinating proliferation and differentiation.
ChIP‐Sequencing and Chromosome Conformation Capture (3C)‐Sequencing were …

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions

…, J Zuin, A Van Den Heuvel, C Kockx, RJ Palstra… - Nature protocols, 2013 - nature.com
Chromosome conformation capture (3C) technology is a powerful and increasingly popular
tool for analyzing the spatial organization of genomes. Several 3C variants have been …

[HTML][HTML] Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription

RJ Palstra, M Simonis, P Klous, E Brasset… - PloS one, 2008 - journals.plos.org
A relationship exists between nuclear architecture and gene activity and it has been
proposed that the activity of ongoing RNA polymerase II transcription determines genome …