Genome-wide characterization of the routes to pluripotency

…, M Benevento, AJ Corso, JL Clancy, R Mosbergen… - Nature, 2014 - nature.com
Somatic cell reprogramming to a pluripotent state continues to challenge many of our
assumptions about cellular specification, and despite major efforts, we lack a complete molecular …

[HTML][HTML] Four simple recommendations to encourage best practices in research software

…, FL Gómez, LJ Oliveira, D Mellor, R Mosbergen… - …, 2017 - ncbi.nlm.nih.gov
Scientific research relies on computer software, yet software is not always developed
following practices that ensure its quality and sustainability. This manuscript does not aim to …

[HTML][HTML] An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator

…, N Cloonan, D Wood, JL Clancy, R Mosbergen… - Nature …, 2014 - nature.com
Reprogramming of somatic cells to induced pluripotent stem cells involves a dynamic
rearrangement of the epigenetic landscape. To characterize this epigenomic roadmap, we have …

[HTML][HTML] Stemformatics: visualisation and sharing of stem cell gene expression

CA Wells, R Mosbergen, O Korn, J Choi… - Stem Cell Research, 2013 - Elsevier
Genome-scale technologies are increasingly adopted by the stem cell research community,
because of the potential to uncover the molecular events most informative about a stem cell …

[HTML][HTML] A molecular classification of human mesenchymal stromal cells

F Rohart, EA Mason, N Matigian, R Mosbergen, O Korn… - PeerJ, 2016 - peerj.com
Mesenchymal stromal cells (MSC) are widely used for the study of mesenchymal tissue repair,
and increasingly adopted for cell therapy, despite the lack of consensus on the identity of …

Stemformatics: visualize and download curated stem cell data

J Choi, CM Pacheco, R Mosbergen, O Korn… - Nucleic acids …, 2019 - academic.oup.com
Stemformatics is an established gene expression data portal containing over 420 public
gene expression datasets derived from microarray, RNA sequencing and single cell profiling …

Characterization of phenotypic and transcriptional differences in human pluripotent stem cells under 2D and 3D culture conditions

…, C Fockenberg, R Mosbergen… - Advanced …, 2016 - Wiley Online Library
Human pluripotent stem cells hold great promise for applications in drug discovery and
regenerative medicine. Microfluidic technology is a promising approach for creating artificial …

Corrigendum: Genome-wide characterization of the routes to pluripotency

…, M Benevento, AJ Corso, JL Clancy, R Mosbergen… - Nature, 2015 - go.gale.com
In this Article, the address listed as Nicole Cloonan's present address (QIMR Berghofer
Medical Research Institute, Queensland 4006, Australia) should have been listed as her other …

[PDF][PDF] Four simple recommendations to encourage best practices in

…, FL Gómez, LJ Oliveira, D Mellor, R Mosbergen… - academia.edu
Scientific research relies on computer software, yet software is not always developed
following practices that ensure its quality and sustainability. This manuscript does not aim to …

[PDF][PDF] An online resource for the Molecular Classification of Human Mesenchymal Stromal Cells

F Rohart, E Mason, N Matigian, R Mosbergen, O Korn… - peerj.com
Contents of Supplemental Files: Extended methods:• Design of test and training datasets•
Pre-processing of the data• Statistical analysis o Notations o A sparse multivariate procedure …