User profiles for Ruben Van Paemel

Ruben Van Paemel

Universiteit Gent
Verified email at UGent.be
Cited by 714

Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study

R Van Paemel, A De Koker, C Vandeputte… - Epigenetics, 2021 - Taylor & Francis
In the clinical management of paediatric solid tumours, histological examination of tumour
tissue obtained by a biopsy remains the gold standard to establish a conclusive pathological …

A versatile method for circulating cell-free DNA methylome profiling by reduced representation bisulfite sequencing

A De Koker, R Van Paemel, B De Wilde, K De Preter… - bioRxiv, 2019 - biorxiv.org
The methylation profile of circulating cell-free DNA (cfDNA) in blood can be exploited to
detect and diagnose cancer and other tissue pathologies and is therefore of great diagnostic …

Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome

R Van Paemel, A De Koker, C Caggiano, A Morlion… - Epigenetics, 2021 - Taylor & Francis
The methylation pattern of cfDNA, isolated from liquid biopsies, is gaining substantial interest
for diagnosis and monitoring of diseases. We have evaluated the impact of type of blood …

When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies

J Verwilt, W Trypsteen, R Van Paemel… - Proceedings of the …, 2020 - National Acad Sciences
With great interest, we read the paper by Zhou et al.(1) describing a methodology that enables
extracellular RNA sequencing (exRNA-seq) from extremely low input (Small Input Liquid …

Cell-free DNA as a diagnostic and prognostic biomarker in pediatric rhabdomyosarcoma

…, A Javadi, R Van Paemel… - JCO Precision …, 2023 - ascopubs.org
PURPOSE Total cell-free DNA (cfDNA) and tumor-derived cfDNA (ctDNA) can be used to
study tumor-derived genetic aberrations. We analyzed the diagnostic and prognostic potential …

[HTML][HTML] The pitfalls and promise of liquid biopsies for diagnosing and treating solid tumors in children: a review

R Van Paemel, R Vlug, K De Preter, N Van Roy… - European journal of …, 2020 - Springer
Cell-free DNA profiling using patient blood is emerging as a non-invasive complementary
technique for cancer genomic characterization. Since these liquid biopsies will soon be …

[HTML][HTML] The feasibility of using liquid biopsies as a complementary assay for copy number aberration profiling in routinely collected paediatric cancer patient samples

R Van Paemel, C Vandeputte, L Raman… - European Journal of …, 2022 - Elsevier
Background Paediatric tumours are often characterised by the presence of recurrent DNA
copy number alterations (CNAs). These DNA copy number profiles, obtained from a tissue …

[HTML][HTML] Multisystem inflammatory syndrome in children related to COVID-19: a systematic review

L Hoste, R Van Paemel, F Haerynck - European journal of pediatrics, 2021 - Springer
An association between a novel pediatric hyperinflammatory condition and SARS-CoV-2
was recently published and termed pediatric inflammatory multisystem syndrome, temporally …

[HTML][HTML] Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

…, A Decock, E Hulstaert, R Van Paemel… - Scientific reports, 2019 - nature.com
RNA profiling has emerged as a powerful tool to investigate the biomarker potential of
human biofluids. However, despite enormous interest in extracellular nucleic acids, RNA …

[HTML][HTML] Case series on clinical applications of liquid biopsy in pediatric solid tumors: towards improved diagnostics and disease monitoring

…, RD Krijger, LS Hiemcke-Jiwa, R Van Paemel… - Frontiers in …, 2023 - frontiersin.org
Background and aims Solid tumors account for about 30% of all pediatric cancers. The
diagnosis is typically based on histological and molecular analysis of a primary tumor biopsy. …