User profiles for S. L. Shipman

Seth Shipman

Associate Professor, UCSF & Gladstone Institutes
Verified email at gladstone.ucsf.edu
Cited by 1993

The cellular and molecular landscape of neuroligins

MA Bemben, SL Shipman, RA Nicoll, KW Roche - Trends in neurosciences, 2015 - cell.com
A fundamental physical interaction exists across the synapse. It is mediated by synaptic
adhesion molecules, and is among the earliest and most indispensable of molecular events …

CRISPR–Cas encoding of a digital movie into the genomes of a population of living bacteria

SL Shipman, J Nivala, JD Macklis, GM Church - Nature, 2017 - nature.com
… Now Seth Shipman and colleagues report a quantitative leap in this direction. They have
encoded a motion picture into the DNA of a population of Escherichia coli by storing pixel …

[HTML][HTML] Molecular recording: transcriptional data collection into the genome

SK Lear, SL Shipman - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights • Molecular recorders capture transcriptional activity within the genome of cells. •
Transcriptional activity is recorded by linking a signal of interest to a DNA writer. • …

Molecular recordings by directed CRISPR spacer acquisition

SL Shipman, J Nivala, JD Macklis, GM Church - Science, 2016 - science.org
INTRODUCTION Although recent advances in DNA synthesis and sequencing technologies
have made practical the writing and readout of arbitrary data in the form of synthetic DNA, …

Rapid neurogenesis through transcriptional activation in human stem cells

…, NE Lewis, P Guye, AHM Ng, SL Shipman… - Molecular systems …, 2014 - embopress.org
Advances in cellular reprogramming and stem cell differentiation now enable ex vivo
studies of human neuronal differentiation. However, it remains challenging to elucidate the …

A comprehensive library of human transcription factors for cell fate engineering

…, G Pasquini, K Wang, A Swiersy, SL Shipman… - Nature …, 2021 - nature.com
Human pluripotent stem cells (hPSCs) offer an unprecedented opportunity to model diverse
cell types and tissues. To enable systematic exploration of the programming landscape …

[PDF][PDF] The diaphragms of fenestrated endothelia: gatekeepers of vascular permeability and blood composition

…, KV Nemani, R Elgueta, T Kobayashi, SL Shipman… - Developmental cell, 2012 - cell.com
Fenestral and stomatal diaphragms are endothelial subcellular structures of unknown function
that form on organelles implicated in vascular permeability: fenestrae, transendothelial …

Functional dependence of neuroligin on a new non-PDZ intracellular domain

SL Shipman, E Schnell, T Hirai, BS Chen… - Nature …, 2011 - nature.com
Neuroligins, a family of postsynaptic adhesion molecules, are important in synaptogenesis
through a well-characterized trans-synaptic interaction with neurexin. In addition, neuroligins …

Precise genome editing across kingdoms of life using retron-derived DNA

…, SK Lear, S Bhattarai-Kline, SL Shipman - Nature chemical …, 2022 - nature.com
Exogenous DNA can be a template to precisely edit a cell’s genome. However, the delivery
of in vitro-produced DNA to target cells can be inefficient, and low abundance of template …

[PDF][PDF] A subtype-specific function for the extracellular domain of neuroligin 1 in hippocampal LTP

SL Shipman, RA Nicoll - Neuron, 2012 - cell.com
At neuronal excitatory synapses, two major subtypes of the synaptic adhesion molecule
neuroligin are present. These subtypes, neuroligin 1 and neuroligin 3, have roles in …