User profiles for S. Y. Rhee

Seung Yon (Sue) Rhee

Director, Plant Resilience Institute, Michigan State University
Verified email at msu.edu
Cited by 28220

Ontologies in biology: design, applications and future challenges

JBL Bard, SY Rhee - nature reviews genetics, 2004 - nature.com
Biological knowledge is inherently complex and so cannot readily be integrated into existing
databases of molecular (for example, sequence) data. An ontology is a formal way of …

HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance

RW Shafer, SY Rhee, D Pillay, V Miller, P Sandstrom… - Aids, 2007 - journals.lww.com
Objectives: Monitoring regional levels of transmitted HIV-1 resistance informs treatment
guidelines and provides feedback on the success of HIV-1 prevention efforts. Surveillance …

Nanotechnology to advance CRISPR–Cas genetic engineering of plants

…, JB Thomas, D W. Ehrhardt, SY Rhee… - Nature …, 2021 - nature.com
CRISPR–Cas genetic engineering of plants holds tremendous potential for providing food
security, battling biotic and abiotic crop stresses caused by climate change, and for …

mapman: a user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

…, P Krüger, J Selbig, LA Müller, SY Rhee… - The Plant …, 2004 - Wiley Online Library
mapman is a user‐driven tool that displays large data sets onto diagrams of metabolic
pathways or other processes. SCAVENGER modules assign the measured parameters to …

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis …

SY Rhee, W Beavis, TZ Berardini, G Chen… - Nucleic acids …, 2003 - academic.oup.com
Arabidopsis thaliana is the most widely-studied plant today. The concerted efforts of over 11
000 researchers and 4000 organizations around the world are generating a rich diversity …

[HTML][HTML] Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

…, CAB Boucher, D van de Vijver, SY Rhee… - PloS one, 2009 - journals.plos.org
Programs that monitor local, national, and regional levels of transmitted HIV-1 drug resistance
inform treatment guidelines and provide feedback on the success of HIV-1 treatment and …

Human immunodeficiency virus reverse transcriptase and protease sequence database

SY Rhee, MJ Gonzales, R Kantor, BJ Betts… - Nucleic acids …, 2003 - academic.oup.com
The HIV reverse transcriptase and protease sequence database is an on-line relational
database that catalogues evolutionary and drug-related sequence variation in the human …

[PDF][PDF] Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis

…, E Oh, S Patil, TW Kim, H Ji, WH Wong, SY Rhee… - Developmental cell, 2010 - cell.com
Brassinosteroids (BRs) regulate a wide range of developmental and physiological processes
in plants through a receptor-kinase signaling pathway that controls the BZR transcription …

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

…, M Latendresse, S Paley, SY Rhee… - Nucleic acids …, 2007 - academic.oup.com
MetaCyc (MetaCyc.org) is a universal database of metabolic pathways and enzymes from
all domains of life. The pathways in MetaCyc are curated from the primary scientific literature, …

[PDF][PDF] iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases

…, X Dai, GB Martin, JJ Giovannoni, PX Zhao, SY Rhee… - Molecular plant, 2016 - cell.com
Transcription factors (TFs) are proteins that regulate the expression of target genes by binding
to specific cis-elements in promoter regions. Transcriptional regulators (TRs) also regulate …