Background A major bottleneck in our understanding of the molecular underpinnings of life
is the assignment of function to proteins. While molecular experiments provide the most …

Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global,
community-driven effort to evaluate and improve the computational annotation of protein …

… External data is added to the head token features, from where it is combined into more
complex features. One example is generated for each token in the sentence, and these are …

Normal prostate and some malignant prostate cancer (PrCa) cell lines undergo acinar
differentiation and form spheroids in three-dimensional (3-D) organotypic culture. Acini formed by …

… Suwisa Kaewphan received the MSc degree in bioinformatics from the University of Turku
and is currently working toward the PhD degree in computer science at the Department of …

… The aim of this work is to support the future development of largescale text mining resources
… our resource this is done weekly — the same interval the official PMCOA dataset is updated. …

… Results: We find that the best performance is achieved using NERsuite, a machine learning
system based on Conditional Random Fields, trained on the Gellus corpus and supported …

… Providing this information is crucial as the CNN-BiLSTM-CRF model is not given any word
level information and is unable to achieve good performance based solely on the characters. …

In this paper we present our system participating in the SemEval-2014 Task 7 in both subtasks
A and B, aiming at recognizing and normalizing disease and symptom mentions from …

… a token is present in the ontology or not, a similarity score ranging from 0 to 1 is assigned for
each … According to our evaluation this is not beneficial for the BACTERIA entities and is thus …