User profiles for S. Marthey

Sylvain Marthey

Bioinformatician, GABI, INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas …
Verified email at inra.fr
Cited by 1092

[HTML][HTML] A comprehensive overview of bull sperm-borne small non-coding RNAs and their diversity across breeds

E Sellem, S Marthey, A Rau, L Jouneau, A Bonnet… - Epigenetics & …, 2020 - Springer
… bias due to sequencing errors (0.1% of sequencing errors may produce up to 30,000 isomiR
artifacts), we focused on 14,765 isomiRs accounting for more than 1% of each miRNA’s

Assessing the performance of single-copy genes for recovering robust phylogenies

G Aguileta, S Marthey, H Chiapello… - Systematic …, 2008 - academic.oup.com
… , the KOG database, which to date is built using only two fungal species (S. cerevisiae and
S. pombe) and require similarity with other more distantly related eukaryotes, as in this case …

[HTML][HTML] Multi-species annotation of transcriptome and chromatin structure in domesticated animals

…, A Goubil, S Lacroix-Lamandé, F Laurent, S Marthey… - BMC biology, 2019 - Springer
… where μ gi represents the mean expression of gene g in sample i, s i the TMM normalization
factor for sample i, tissue(i)∈{liver, CD4, CD8} and animal(i)∈{1,2,3,4} the tissue and …

[HTML][HTML] Characterisation and comparison of lactating mouse and bovine mammary gland miRNomes

S Le Guillou, S Marthey, D Laloë, J Laubier… - PloS one, 2014 - journals.plos.org
Background The mammary gland is a dynamic organ that undergoes important physiological
changes during reproductive cycles. Until now, data regarding the characterisation of …

[HTML][HTML] Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm

E Sellem, S Marthey, A Rau, L Jouneau, A Bonnet… - Epigenetics & …, 2021 - Springer
… For instance, 5.8S derived fragments are primarily expressed in epididymis corpus. b
Relative expressions of rRNA fragment subtypes were computed per region, showing that …

[HTML][HTML] FUNYBASE: a FUNgal phYlogenomic dataBASE

S Marthey, G Aguileta, F Rodolphe, A Gendrault… - BMC …, 2008 - Springer
… The single previous phylogenetic analysis of this group used the internal transcribed
spacers and 5.8S rRNA (ITS1-5.8S-ITS2) sequences [28]. Our aim was to evaluate the extant …

A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure

J Li, B Bed'hom, S Marthey, M Valade… - Pigment Cell & …, 2019 - Wiley Online Library
… for 30 s, 68C (−1.0C/cycle) for 30 s, and 72C for 30 s (60 s for primers E6&7_F and E6&7_R)
each, followed by 24 cycles of 95C for 30 s, 52C for 30 s, and 72C for 30 s (60 s for primers …

[HTML][HTML] Characterization of Holstein and Normande whole milk miRNomes highlights breed specificities

…, S Barbey, MN Rossignol, R Lefebvre, S Marthey… - Scientific reports, 2019 - nature.com
… No difference in lactose, urea, acetone and BHB content was observed between breeds,
whatever animal’s age. The somatic cell counts vary from 45,200 cells/ml to 150,600 cells/ml, …

[HTML][HTML] Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches

L Mobuchon, S Marthey, M Boussaha, S Le Guillou… - BMC genomics, 2015 - Springer
… Foster City, CA, USA) following the manufacturer’s instructions. Amplification was performed
at 95C for 10 min, pursued by 40 cycles of 95C for 15 s and 60C for 1 min. All miRNA levels …

[HTML][HTML] Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

…, C Hennequet-Antier, E Le Bihan-Duval, S Marthey… - Bmc Genomics, 2011 - Springer
… Reaction mixtures were incubated in an ABI PRISM 7000 apparatus (Applied Biosystems,
Courtaboeuf, France) programmed to conduct one cycle (95C for 10 min) and 40 cycles (15 s