User profiles for S. Sheikhizadeh

Siavash Sheikhizadeh

Wageningen University
Verified email at wur.nl
Cited by 446

PanTools: representation, storage and exploration of pan-genomic data

S Sheikhizadeh, ME Schranz, M Akdel… - …, 2016 - academic.oup.com
… not visited yet in either orientation, a new node of length k is added to the graph by the
function Create, which is then Extended until we encounter a previously encountered k-mer. We …

ACE: accurate correction of errors using K-mer tries

S Sheikhizadeh, D de Ridder - Bioinformatics, 2015 - academic.oup.com
… Availability and implementation: ACE is licensed under the GPL license and can be freely
obtained at https://github.com/sheikhizadeh/ACE/ . The program is implemented in C++ and …

PanTools v3: functional annotation, classification and phylogenomics

…, DJM van Workum, S Sheikhizadeh Anari… - …, 2022 - academic.oup.com
… Assuming that BUSCO genes are single copy, we find optimal settings such that each is
placed in a separate homology group with one representative gene per genome (Fig. 1B). …

Breast and cervical cancer screening in women referred to urban healthcare centers in Kerman, Iran, 2015

H Ahmadipour, S Sheikhizade - Asian Pacific Journal of Cancer …, 2016 - journal.waocp.org
… It is clear that screening participation is low in our society. Therefore, it is essential looking
for factors that are effective on this situation and it should be done faster due to the rising …

Self-care activities among women referred to health care centers in Kerman

S Sheikhizadeh - Journal of Health Based Research, 2016 - hbrj.kmu.ac.ir
Introduction: Self-care, an important aspect of healthy lifestyle, means to follow a healthy life
style to prevent diseases. Given the importance of self-care, this study aimed to evaluate self-…

[HTML][HTML] Reducing pain at split thickness donor sites with silicone dressing compared to petrolatum gauze dressing

…, H Karimi, S Sheikhizadeh… - Annals of Burns and …, 2019 - ncbi.nlm.nih.gov
Many modalities have been introduced to reduce devastating pain at the donor area. This is
a prospective, randomized study to assess the effect of silicone dressing in reducing pain at …

[HTML][HTML] Efficient inference of homologs in large eukaryotic pan-proteomes

S Sheikhizadeh Anari, D de Ridder, ME Schranz… - BMC …, 2018 - Springer
… scores, before the similarity component is passed to the MCL algorithm, we raise the scores
to the power of C, the contrast parameter. This operation is similar to one round of expansion …

SMOTER, a structured motif finder based on an exhaustive tree-based algorithm

S Sheikhizadeh, S Hosseini - Current Bioinformatics, 2014 - ingentaconnect.com
In this paper, an exhaustive algorithm for extracting structured motifs has been presented.
Structured motif is defined as an ordered set of highly-conserved over-presented patterns …

[PDF][PDF] Pan-genomic read mapping

S Sheikhizadeh - Towards comparative pan-genomics - edepot.wur.nl
In modern genomics, mapping reads to a single reference genome is common practice.
However, a reference genome does not necessarily accurately represent a population or …

[PDF][PDF] Optimization of OSPF Weights Using a Metaheuristic Based on Random Samplings

S Sheikhizadeh - Citeseer
… paths, this behavior is called load-balancing. In mathematical words for every pair of nodes
NN)t,s( × ∈ and node u, located on a shortest path from s to t which is the source node of two …