[PDF][PDF] Using evolutionary algorithms and machine learning to explore sequence space for the discovery of antimicrobial peptides
…, RT McBurney, V Kulikov, JS Mathieson, SG Reyes… - Chem, 2018 - cell.com
We present a proof-of-concept methodology for efficiently optimizing a chemical trait by
using an artificial evolutionary workflow. We demonstrate this by optimizing the efficacy of …
using an artificial evolutionary workflow. We demonstrate this by optimizing the efficacy of …
[HTML][HTML] Time-programmable drug dosing allows the manipulation, suppression and reversal of antibiotic drug resistance in vitro
M Yoshida, SG Reyes, S Tsuda, T Horinouchi… - Nature …, 2017 - nature.com
Multi-drug strategies have been attempted to prolong the efficacy of existing antibiotics, but
with limited success. Here we show that the evolution of multi-drug-resistant Escherichia coli …
with limited success. Here we show that the evolution of multi-drug-resistant Escherichia coli …
PURE mRNA display and cDNA display provide rapid detection of core epitope motif via high‐throughput sequencing
SG Reyes, Y Kuruma, M Fujimi… - Biotechnology and …, 2021 - Wiley Online Library
The reconstructed in vitro translation system known as the PURE system has been used in
a variety of cell‐free experiments such as the expression of native and de novo proteins as …
a variety of cell‐free experiments such as the expression of native and de novo proteins as …
Identification of conditions for efficient cell-sized liposome preparation using commercially available reconstituted in vitro transcription-translation system
A Uyeda, SG Reyes, T Kanamori, T Matsuura - Journal of bioscience and …, 2022 - Elsevier
Attempts to create complex molecular systems that mimic parts of cellular systems using a
bottom-up approach have become important in the field of biology. Among various molecular …
bottom-up approach have become important in the field of biology. Among various molecular …
Uncovering cell-free protein expression dynamics by a promoter library with diverse strengths
Cell-free protein expression systems have been widely used for synthetic biology and metabolic
engineering applications in recent years. Yet little is known about protein expression in …
engineering applications in recent years. Yet little is known about protein expression in …
Cell-free protein systems and in vitro display methods as compelling tools for high-throughput screening
SL Galiñanes Reyes - 2021 - theses.gla.ac.uk
Synthetic biology has become a promising field that aims at developing and using tools to
work with recombinant DNA. In this field, cell-free protein expression systems have become a …
work with recombinant DNA. In this field, cell-free protein expression systems have become a …
Exploring Peptide Sequence Space Using Artificial Intelligence for Antimicrobial Peptides
…, V Kulikov, JS Mathieson, SG Reyes… - Available at SSRN …, 2018 - papers.ssrn.com
The number of effective antibiotics is rapidly decreasing due to the emergence of resistant
bacteria, which necessitates the development of not only new, but novel strategies for …
bacteria, which necessitates the development of not only new, but novel strategies for …
PURE mRNA display and cDNA display provide rapid detection of consensus binding motif via high-throughput sequencing
SG Reyes, Y Kuruma, M Fujimi, M Yamazaki… - Authorea …, 2020 - essopenarchive.org
The recombinant in vitro translation system known as the PURE system has been used in a
variety of cell-free experiments such as expression of native and de novo proteins as well as …
variety of cell-free experiments such as expression of native and de novo proteins as well as …
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…, RT McBurney, V Kulikov, JS Mathieson, SG Reyes… - core.ac.uk
We present a proof of concept methodology to efficiently optimize a chemical trait using an
artificial evolutionary workflow. We demonstrate this by optimizing the efficacy of antimicrobial …
artificial evolutionary workflow. We demonstrate this by optimizing the efficacy of antimicrobial …
Invariant sets for switched systems to tackle bacterial resistance
The use of chemotherapeutics agents in the treatment of bacterial infections have resulted
in the emergence of multidrug resistant pathogens. Clinically, with single and even multiple …
in the emergence of multidrug resistant pathogens. Clinically, with single and even multiple …