[HTML][HTML] Discovery of signatures of fatal neonatal illness in vital signs using highly comparative time-series analysis

JC Niestroy, JR Moorman, MA Levinson, SA Manir… - NPJ digital …, 2022 - nature.com
To seek new signatures of illness in heart rate and oxygen saturation vital signs from
Neonatal Intensive Care Unit (NICU) patients, we implemented highly comparative time-series …

[PDF][PDF] Generating SADI semantic web services from declarative descriptions

MS Al Manir - 2019 - unbscholar.lib.unb.ca
Accessing information stored in databases remains a challenge for many types of end users.
In contrast, accessing information from knowledge bases allows for more intuitive query …

[HTML][HTML] Network-based biomonitoring: exploring freshwater food webs with stable isotope analysis and DNA metabarcoding

…, MTG Wright, CJO Baker, MS Al Manir… - Frontiers in Ecology …, 2019 - frontiersin.org
Threatened freshwater ecosystems urgently require improved tools for effective management.
Food web analysis is currently under-utilized, yet can be used to generate metrics to …

Linking DNA metabarcoding and text mining to create network-based biomonitoring tools: A case study on boreal wetland macroinvertebrate communities

…, D Gravel, A Bush, CJO Baker, MS Al Manir… - Advances in ecological …, 2018 - Elsevier
Ecological networks are powerful tools for visualizing biodiversity data and assessing ecosystem
health and function. Constructing these networks requires considerable empirical efforts…

A malaria analytics framework to support evolution and interoperability of global health surveillance systems

JH Brenas, MS Al-Manir, CJO Baker… - IEEE …, 2017 - ieeexplore.ieee.org
Malaria is a leading cause of death in Africa. Many organizations, NGO's, and government
agencies are collaborating to prevent, control, and eliminate malaria. In order to succeed in …

[HTML][HTML] A surveillance infrastructure for malaria analytics: provisioning data access and preservation of interoperability

MS Al Manir, JH Brenas, CJO Baker… - JMIR Public Health …, 2018 - publichealth.jmir.org
Background: According to the World Health Organization, malaria surveillance is weakest in
countries and regions with the highest malaria burden. A core obstacle is that the data …

[HTML][HTML] FAIRSCAPE: A framework for FAIR and reproducible biomedical analytics

MA Levinson, J Niestroy, S Al Manir, K Fairchild… - Neuroinformatics, 2022 - Springer
Results of computational analyses require transparent disclosure of their supporting
resources, while the analyses themselves often can be very large scale and involve multiple …

[HTML][HTML] Perspectives on automated composition of workflows in the life sciences

…, M Palmblad, J Ison, V Schwämmle, MS Al Manir… - …, 2021 - ncbi.nlm.nih.gov
Scientific data analyses often combine several computational tools in automated pipelines,
or workflows. Thousands of such workflows have been used in the life sciences, though their …

Evidence graphs: Supporting transparent and FAIR computation, with defeasible reasoning on data, methods, and results

S Al Manir, J Niestroy, MA Levinson, T Clark - Provenance and Annotation …, 2021 - Springer
Introduction: Transparency of computation is a requirement for assessing the validity of
computed results and research claims based upon them; and it is essential for access to, …

Valet SADI: provisioning SADI web services for semantic querying of relational databases

MS Al Manir, A Riazanov, H Boley, A Klein… - Proceedings of the 20th …, 2016 - dl.acm.org
Semantic Querying (SQ) is emerging as an attractive approach for retrieval of data from
relational and other conceptually similar databases, targeting users with limited or no technical …