[HTML][HTML] Discovery of signatures of fatal neonatal illness in vital signs using highly comparative time-series analysis
JC Niestroy, JR Moorman, MA Levinson, SA Manir… - NPJ digital …, 2022 - nature.com
To seek new signatures of illness in heart rate and oxygen saturation vital signs from
Neonatal Intensive Care Unit (NICU) patients, we implemented highly comparative time-series …
Neonatal Intensive Care Unit (NICU) patients, we implemented highly comparative time-series …
[PDF][PDF] Generating SADI semantic web services from declarative descriptions
MS Al Manir - 2019 - unbscholar.lib.unb.ca
Accessing information stored in databases remains a challenge for many types of end users.
In contrast, accessing information from knowledge bases allows for more intuitive query …
In contrast, accessing information from knowledge bases allows for more intuitive query …
[HTML][HTML] Network-based biomonitoring: exploring freshwater food webs with stable isotope analysis and DNA metabarcoding
…, MTG Wright, CJO Baker, MS Al Manir… - Frontiers in Ecology …, 2019 - frontiersin.org
Threatened freshwater ecosystems urgently require improved tools for effective management.
Food web analysis is currently under-utilized, yet can be used to generate metrics to …
Food web analysis is currently under-utilized, yet can be used to generate metrics to …
Linking DNA metabarcoding and text mining to create network-based biomonitoring tools: A case study on boreal wetland macroinvertebrate communities
Ecological networks are powerful tools for visualizing biodiversity data and assessing ecosystem
health and function. Constructing these networks requires considerable empirical efforts…
health and function. Constructing these networks requires considerable empirical efforts…
A malaria analytics framework to support evolution and interoperability of global health surveillance systems
Malaria is a leading cause of death in Africa. Many organizations, NGO's, and government
agencies are collaborating to prevent, control, and eliminate malaria. In order to succeed in …
agencies are collaborating to prevent, control, and eliminate malaria. In order to succeed in …
[HTML][HTML] A surveillance infrastructure for malaria analytics: provisioning data access and preservation of interoperability
Background: According to the World Health Organization, malaria surveillance is weakest in
countries and regions with the highest malaria burden. A core obstacle is that the data …
countries and regions with the highest malaria burden. A core obstacle is that the data …
[HTML][HTML] FAIRSCAPE: A framework for FAIR and reproducible biomedical analytics
MA Levinson, J Niestroy, S Al Manir, K Fairchild… - Neuroinformatics, 2022 - Springer
Results of computational analyses require transparent disclosure of their supporting
resources, while the analyses themselves often can be very large scale and involve multiple …
resources, while the analyses themselves often can be very large scale and involve multiple …
[HTML][HTML] Perspectives on automated composition of workflows in the life sciences
…, M Palmblad, J Ison, V Schwämmle, MS Al Manir… - …, 2021 - ncbi.nlm.nih.gov
Scientific data analyses often combine several computational tools in automated pipelines,
or workflows. Thousands of such workflows have been used in the life sciences, though their …
or workflows. Thousands of such workflows have been used in the life sciences, though their …
Evidence graphs: Supporting transparent and FAIR computation, with defeasible reasoning on data, methods, and results
S Al Manir, J Niestroy, MA Levinson, T Clark - Provenance and Annotation …, 2021 - Springer
Introduction: Transparency of computation is a requirement for assessing the validity of
computed results and research claims based upon them; and it is essential for access to, …
computed results and research claims based upon them; and it is essential for access to, …
Valet SADI: provisioning SADI web services for semantic querying of relational databases
MS Al Manir, A Riazanov, H Boley, A Klein… - Proceedings of the 20th …, 2016 - dl.acm.org
Semantic Querying (SQ) is emerging as an attractive approach for retrieval of data from
relational and other conceptually similar databases, targeting users with limited or no technical …
relational and other conceptually similar databases, targeting users with limited or no technical …