User profiles for Sarah K. Hilton

Sarah K. Hilton

Department of Genome Sciences, University of Washington
Verified email at uw.edu
Cited by 3342

[PDF][PDF] Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

TN Starr, AJ Greaney, SK Hilton, D Ellis, KHD Crawford… - cell, 2020 - cell.com
The receptor binding domain (RBD) of the SARS-CoV-2 spike glycoprotein mediates viral
attachment to ACE2 receptor and is a major determinant of host range and a dominant target …

[PDF][PDF] Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition

…, P Gilchuk, SJ Zost, E Binshtein, AN Loes, SK Hilton… - Cell host & …, 2021 - cell.com
Antibodies targeting the SARS-CoV-2 spike receptor-binding domain (RBD) are being developed
as therapeutics and are a major contributor to neutralizing antibody responses elicited …

[HTML][HTML] Metataxonomic and metagenomic approaches vs. culture-based techniques for clinical pathology

SK Hilton, E Castro-Nallar, M Pérez-Losada… - Frontiers in …, 2016 - frontiersin.org
Diagnoses that are both timely and accurate are critically important for patients with life-threatening
or drug resistant infections. Technological improvements in High-Throughput …

Mapping mutational effects along the evolutionary landscape of HIV envelope

HK Haddox, AS Dingens, SK Hilton, J Overbaugh… - Elife, 2018 - elifesciences.org
10.7554/eLife.34420.001 The immediate evolutionary space accessible to HIV is largely
determined by how single amino acid mutations affect fitness. These mutational effects can shift …

Single-molecule long-read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia

…, M Pérez-Losada, SK Hilton… - Journal of clinical …, 2014 - Am Soc Microbiol
In critically ill patients, the development of pneumonia results in significant morbidity and
mortality and additional health care costs. The accurate and rapid identification of the microbial …

[HTML][HTML] dms-view: Interactive visualization tool for deep mutational scanning data

SK Hilton, J Huddleston, A Black, K North… - Journal of open …, 2020 - ncbi.nlm.nih.gov
The high-throughput technique of deep mutational scanning (DMS) has recently made it
possible to experimentally measure the effects of all amino-acid mutations to a protein (Fowler & …

Drug-regulated CD33-targeted CAR T cells control AML using clinically optimized rapamycin dosing

…, G Tampella, D Xia, PPL So, SK Hilton… - The Journal of …, 2024 - Am Soc Clin Investig
Chimeric antigen receptor (CAR) designs that incorporate pharmacologic control are desirable,
however designs suitable for clinical translation are needed. We designed a fully human, …

High-resolution mapping of the neutralizing and binding specificities of polyclonal sera post-HIV Env trimer vaccination

AS Dingens, P Pratap, K Malone, SK Hilton, T Ketas… - Elife, 2021 - elifesciences.org
Mapping polyclonal serum responses is critical to rational vaccine design. However, most
high-resolution mapping approaches involve isolating and characterizing individual antibodies…

[HTML][HTML] phydms: Software for phylogenetic analyses informed by deep mutational scanning

SK Hilton, MB Doud, JD Bloom - PeerJ, 2017 - peerj.com
It has recently become possible to experimentally measure the effects of all amino-acid point
mutations to proteins using deep mutational scanning. These experimental measurements …

Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence

SK Hilton, JD Bloom - Virus evolution, 2018 - academic.oup.com
Molecular phylogenetics is often used to estimate the time since the divergence of modern
gene sequences. For highly diverged sequences, such phylogenetic techniques sometimes …