Holistic optimization of an RNA-seq workflow for multi-threaded environments
…, SD Athmalingam Ravishankar… - …, 2019 - academic.oup.com
For many next generation-sequencing pipelines, the most computationally intensive step is
the alignment of reads to a reference sequence. As a result, alignment software such as the …
the alignment of reads to a reference sequence. As a result, alignment software such as the …
An investigation on public cloud performance variation for an rna sequencing workflow
Public Infrastructure-as-a-Service (IaaS) clouds abstract various details regarding the
implementation of resources provided to users. For example, users are not informed about the …
implementation of resources provided to users. For example, users are not informed about the …
[PDF][PDF] Profiling Resource Utilization of Bioinformatics Workflows
Background We present a software tool, the Container Profiler, that measures and records
the resource usage of any containerized task. Our tool profiles the CPU, memory, disk, and …
the resource usage of any containerized task. Our tool profiles the CPU, memory, disk, and …