Global reconstruction of the human metabolic network based on genomic and bibliomic data

NC Duarte, SA Becker, N Jamshidi… - Proceedings of the …, 2007 - National Acad Sciences
Metabolism is a vital cellular process, and its malfunction is a major contributor to human
disease. Metabolic networks are complex and highly interconnected, and thus systems-level …

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson… - Nature protocols, 2007 - nature.com
The manner in which microorganisms utilize their metabolic processes can be predicted
using constraint-based analysis of genome-scale metabolic networks. Herein, we present the …

[HTML][HTML] Context-specific metabolic networks are consistent with experiments

SA Becker, BO Palsson - PLoS computational biology, 2008 - journals.plos.org
Reconstructions of cellular metabolism are publicly available for a variety of different
microorganisms and some mammalian genomes. To date, these reconstructions are “genome-scale…

[HTML][HTML] Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation

SA Becker, BØ Palsson - BMC microbiology, 2005 - Springer
Background Several strains of bacteria have sequenced and annotated genomes, which have
been used in conjunction with biochemical and physiological data to reconstruct genome-…

Diagnostic testing for the novel coronavirus

JM Sharfstein, SJ Becker, MM Mello - Jama, 2020 - jamanetwork.com
Controversies over diagnostic testing have dominated US headlines about severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), the novel coronavirus responsible for …

Structural basis of mismatch recognition by a SARS-CoV-2 proofreading enzyme

C Liu, W Shi, ST Becker, DG Schatz, B Liu, Y Yang - Science, 2021 - science.org
Coronavirus 3′-to-5′ exoribonuclease (ExoN), residing in the nonstructural protein (nsp)
10–nsp14 complex, boosts replication fidelity by proofreading RNA synthesis and is critical …

[HTML][HTML] miR-145 antagonizes SNAI1-mediated stemness and radiation resistance in colorectal cancer

Y Zhu, C Wang, SA Becker, K Hurst, LM Nogueira… - Molecular Therapy, 2018 - cell.com
Epithelial-to-mesenchymal transition (EMT) has been closely linked with therapy resistance
and cancer stem cells (CSCs). However, EMT pathways have proven challenging to …

Wolf dispersal in the rocky mountains, Western United States: 1993–2008

…, DK Boyd, DW Smith, SA Becker… - The Journal of …, 2017 - Wiley Online Library
Gray wolves (Canis lupus) were extirpated from the northern Rocky Mountains (NRM) of the
United States by the 1930s. Dispersing wolves from Canada naturally recolonized Montana …

Medical screening in the workplace: proposed principles

…, TM Frazier, L Wilson, SP Becker… - … of Occupational and …, 1986 - journals.lww.com
Medical screening and biological monitoring are two tech-niquesin a continuum of practices
used to prevent occupational disease. Medical screening is the examination of workers for …

Pancreatic trypsin increases matrix metalloproteinase-9 accumulation and activation during acute intestinal ischemia-reperfusion in the rat

HS Rosário, SW Waldo, SA Becker… - The American journal of …, 2004 - Elsevier
Ischemia-reperfusion of the intestine produces a set of inflammatory mediators, the origin of
which has recently been shown to involve pancreatic digestive enzymes. Matrix …