User profiles for Sean M. Gibbons
Sean M. GibbonsAssociate Professor, Institute for Systems Biology Verified email at isbscience.org Cited by 26231 |
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …
past two decades have substantially improved understanding of the microbial world. This …
[HTML][HTML] Health and disease markers correlate with gut microbiome composition across thousands of people
…, B Smith, ND Price, JC Lovejoy, SM Gibbons… - Nature …, 2020 - nature.com
Variation in the human gut microbiome can reflect host lifestyle and behaviors and influence
disease biomarker levels in the blood. Understanding the relationships between gut …
disease biomarker levels in the blood. Understanding the relationships between gut …
[PDF][PDF] Elevated rates of horizontal gene transfer in the industrialized human microbiome
…, SM Kearney, K Moniz, M Noel, J Hooker, SM Gibbons… - Cell, 2021 - cell.com
Industrialization has impacted the human gut ecosystem, resulting in altered microbiome
composition and diversity. Whether bacterial genomes may also adapt to the industrialization of …
composition and diversity. Whether bacterial genomes may also adapt to the industrialization of …
[HTML][HTML] A communal catalogue reveals Earth's multiscale microbial diversity
Our growing awareness of the microbial world’s importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
Longitudinal analysis of microbial interaction between humans and the indoor environment
The bacteria that colonize humans and our built environments have the potential to influence
our health. Microbial communities associated with seven families and their homes over 6 …
our health. Microbial communities associated with seven families and their homes over 6 …
[HTML][HTML] Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
Hundreds of clinical studies have demonstrated associations between the human microbiome
and disease, yet fundamental questions remain on how we can generalize this knowledge…
and disease, yet fundamental questions remain on how we can generalize this knowledge…
[PDF][PDF] Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism
V Leone, SM Gibbons, K Martinez, AL Hutchison… - Cell host & …, 2015 - cell.com
Circadian clocks and metabolism are inextricably intertwined, where central and hepatic
circadian clocks coordinate metabolic events in response to light-dark and sleep-wake cycles. …
circadian clocks coordinate metabolic events in response to light-dark and sleep-wake cycles. …
[HTML][HTML] Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
We present a performance-optimized algorithm, subsampled open-reference OTU picking,
for assigning marker gene (eg, 16S rRNA) sequences generated on next-generation …
for assigning marker gene (eg, 16S rRNA) sequences generated on next-generation …
Gut microbiome pattern reflects healthy ageing and predicts survival in humans
The gut microbiome has important effects on human health, yet its importance in human
ageing remains unclear. In the present study, we demonstrate that, starting in mid-to-late …
ageing remains unclear. In the present study, we demonstrate that, starting in mid-to-late …
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research
Our understanding of how the gut microbiome interacts with its human host has been
restrained by limited access to longitudinal datasets to examine stability and dynamics, and by …
restrained by limited access to longitudinal datasets to examine stability and dynamics, and by …