A computational toolbox to investigate the metabolic potential and resource allocation in fission yeast

…, M Isaku, G Xie, S Mendoza Farias… - Msystems, 2022 - Am Soc Microbiol
The fission yeast, Schizosaccharomyces pombe , is a popular eukaryal model organism for
cell division and cell cycle studies. With this extensive knowledge of its cell and molecular …

Metabolic modeling of microorganisms and dynamics of microbial communities in the food industry

SNM Farías - 2024 - research.vu.nl
In this thesis, we initially evaluated a wide range of reconstruction tools to determine their
optimal performance in various cases. By utilizing the appropriate reconstruction tools, we …

Development and Validation of a Genome-Scale Metabolic Model for the Malolactic-Bacterium Oenococcus Oeni

SM Farías - 2014 - search.proquest.com
Oenococcus oeni is one of the most important lactic acid bacteria that develops during
winemaking. It is responsible of carrying out malolactic fermentation, which significantly affects the …

[PDF][PDF] Mendoza

N Sebastián - research.vu.nl
2.1 Abstract Wine fermentation is an ancient biotechnological process mediated by different
microorganisms such as yeast and bacteria. Understanding of the metabolic and …

[HTML][HTML] Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment

…, Á Cintolesi, J Maldonado, SN Mendoza… - Scientific Reports, 2020 - nature.com
The Atacama Desert is the most arid desert on Earth, focus of important research activities
related to microbial biodiversity studies. In this context, metabolic characterization of arid soil …

Local hydrological conditions influence tree diversity and composition across the Amazon basin

…, A Andrade, JL Camargo, A Monteagudo Mendoza… - …, 2022 - Wiley Online Library
Tree diversity and composition in Amazonia are known to be strongly determined by the water
supplied by precipitation. Nevertheless, within the same climatic regime, water availability …

Geographic patterns of tree dispersal modes in Amazonia and their ecological correlates

…, NCA Pitman, A Monteagudo Mendoza… - Global ecology and …, 2023 - Wiley Online Library
Aim To investigate the geographic patterns and ecological correlates in the geographic
distribution of the most common tree dispersal modes in Amazonia (endozoochory, synzoochory, …

Persistent effects of pre-Columbian plant domestication on Amazonian forest composition

…, D Sabatier, JF Molino, DC López, AM Mendoza… - Science, 2017 - science.org
The extent to which pre-Columbian societies altered Amazonian landscapes is hotly debated.
We performed a basin-wide analysis of pre-Columbian impacts on Amazonian forests by …

Gap junction intercellular communications regulate NK cell activation and modulate NK cytotoxic capacity

A Tittarelli, A Mendoza-Naranjo, M Farías… - The Journal of …, 2014 - journals.aai.org
Gap junctions (GJs) mediate intercellular communication between adjacent cells. Previously,
we showed that connexin 43 (Cx43), the main GJ protein in the immune system, mediates …

[HTML][HTML] Biased-corrected richness estimates for the Amazonian tree flora

…, NCA Pitman, JF Ramos, A Monteagudo Mendoza… - Scientific reports, 2020 - nature.com
Amazonian forests are extraordinarily diverse, but the estimated species richness is very
much debated. Here, we apply an ensemble of parametric estimators and a novel technique …