User profiles for Seda Arat

Seda Arat

Pfizer
Verified email at pfizer.com
Cited by 380

[HTML][HTML] Modeling stochasticity and variability in gene regulatory networks

D Murrugarra, A Veliz-Cuba, B Aguilar, S Arat… - EURASIP Journal on …, 2012 - Springer
Modeling stochasticity in gene regulatory networks is an important and complex problem in
molecular systems biology. To elucidate intrinsic noise, several modeling strategies such as …

[HTML][HTML] Machine learning guided association of adverse drug reactions with in vitro target-based pharmacology

R Ietswaart, S Arat, AX Chen, S Farahmand, B Kim… - …, 2020 - thelancet.com
Background Adverse drug reactions (ADRs) are one of the leading causes of morbidity and
mortality in health care. Understanding which drug targets are linked to ADRs can lead to the …

[HTML][HTML] Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets

Z Wang, S Arat, M Magid-Slav, JR Brown - BMC systems biology, 2018 - Springer
Background With the global emergence of multi-drug resistant strains of Mycobacterium
tuberculosis, new strategies to treat tuberculosis are urgently needed such as therapeutics …

[HTML][HTML] A Network Biology Approach to Denitrification in Pseudomonas aeruginosa

S Arat, GS Bullerjahn, R Laubenbacher - PLoS One, 2015 - journals.plos.org
Pseudomonas aeruginosa is a metabolically flexible member of the Gammaproteobacteria.
Under anaerobic conditions and the presence of nitrate, P. aeruginosa can perform (…

T cells and monocyte-derived myeloid cells mediate immunotherapy-related hepatitis in a mouse model

HP Llewellyn, S Arat, J Gao, J Wen, S Xia, D Kalabat… - Journal of …, 2021 - Elsevier
Background & Aims Immune checkpoint inhibitors (ICIs) are associated with immune-related
adverse events (irAEs) which are more severe when ICIs are used in combination. We …

Evaluating the sensitivity and specificity of promising circulating biomarkers to diagnose liver injury in humans

…, C Hyde, D Potter, J Wang, Q Zong, S Arat… - Toxicological …, 2021 - academic.oup.com
Early diagnosis of drug-induced liver injury (DILI) continues to be a major hurdle during drug
development and postmarketing. The objective of this study was to evaluate the diagnostic …

[HTML][HTML] Activated oncogenic pathway modifies iron network in breast epithelial cells: a dynamic modeling perspective

J Chifman, S Arat, Z Deng, E Lemler… - PLoS computational …, 2017 - journals.plos.org
Dysregulation of iron metabolism in cancer is well documented and it has been suggested
that there is interdependence between excess iron and increased cancer incidence and …

Tissue-Specific Trans Regulation of the Mouse Epigenome

CL Baker, M Walker, S Arat, G Ananda, P Petkova… - Genetics, 2019 - academic.oup.com
While much is known about the enzymes that deposit and remove epigenetic modifications,
less is known about the trans-acting system that determines when and where these …

[PDF][PDF] Mobile government and organizational effectiveness

C Borucki, S Arat, I Kushchu - … of the First European Conference on …, 2005 - academia.edu
Adoption of mobile technologies by governmental units not only benefits the parties who use
these services, but also can have a positive impact on the internal workings of public sector …

Use of the dTAG system in vivo to degrade CDK2 and CDK5 in adult mice and explore potential safety liabilities

…, T Sung, K Palyada, J Qian, S Arat… - Toxicological …, 2023 - academic.oup.com
The degradation tag (dTAG) system for target protein degradation can remove proteins from
biological systems without the drawbacks of some genetic methods, such as slow kinetics, …