Qiita: rapid, web-enabled microbiome meta-analysis
…, JG Sanders, J Shorenstein, H Holste, S Petrus… - Nature …, 2018 - nature.com
Multi-omic insights into microbiome function and composition typically advance one study at
a time. However, in order for relationships across studies to be fully understood, data must …
a time. However, in order for relationships across studies to be fully understood, data must …
Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus
Changing ocean conditions driven by anthropogenic activities may have a negative impact
on fisheries by increasing stress and disease. To understand how environment and host …
on fisheries by increasing stress and disease. To understand how environment and host …
The seed transcriptome of Rafflesia reveals horizontal gene transfer and convergent evolution: Implications for conserving the world's largest flower
…, RD Pedales, Z Joly‐Lopez, S Petrus… - Plants, People …, 2023 - Wiley Online Library
Societal Impact Statement Rafflesia is a genus of parasitic plants with the largest flowers in
the world, unique to the threatened forest habitats of tropical Asia. Here, we report on genes …
the world, unique to the threatened forest habitats of tropical Asia. Here, we report on genes …
[HTML][HTML] A machine learning method to identify genetic variants potentially associated with Alzheimer's disease
B Monk, A Rajkovic, S Petrus, A Rajkovic… - Frontiers in …, 2021 - frontiersin.org
There is hope that genomic information will assist prediction, treatment, and understanding
of Alzheimer’s disease (AD). Here, using exome data from ∼10,000 individuals, we explore …
of Alzheimer’s disease (AD). Here, using exome data from ∼10,000 individuals, we explore …
Chromosome-level genome assembly of a human fungal pathogen reveals synteny among geographically distinct species
Histoplasma capsulatum , a dimorphic fungal pathogen, is the most common cause of fungal
respiratory infections in immunocompetent hosts. Histoplasma is endemic in the Ohio and …
respiratory infections in immunocompetent hosts. Histoplasma is endemic in the Ohio and …
PanKmer: k-mer-based and reference-free pangenome analysis
AJ Aylward, S Petrus, A Mamerto, NT Hartwick… - …, 2023 - academic.oup.com
Pangenomes are replacing single reference genomes as the definitive representation of DNA
sequence within a species or clade. Pangenome analysis predominantly leverages graph-…
sequence within a species or clade. Pangenome analysis predominantly leverages graph-…
Chromosome-level baobab (Adansonia digitata) genome illuminates its evolutionary insights
JK Kitony, K Colt, BW Abra, NT Hartwick, S Petrus… - bioRxiv, 2024 - biorxiv.org
Baobab, Adansonia digitata, is a long-lived tree endemic to Africa that holds great economic,
ecological, and cultural value. However, our knowledge of its genomic features, …
ecological, and cultural value. However, our knowledge of its genomic features, …
Telomere Length in Plants Estimated with Long Read Sequencing
K Colt, S Petrus, BW Abramson, A Mamerto… - bioRxiv, 2024 - biorxiv.org
Telomeres play an important role in chromosome stability and their length is thought to be
related to an organism's lifestyle and lifespan. Telomere length is variable across plant …
related to an organism's lifestyle and lifespan. Telomere length is variable across plant …
Identification of Synthetic Engineering in Prokaryotic Genomes Using Evolved Neural Networks
GB Fogel, ES Liu, B Abramson, S Petrus… - … IEEE Conference on …, 2022 - ieeexplore.ieee.org
Synthetic biology affords the opportunity to engineer biological systems for enhanced behaviors
of interest to humanity. However, along with this benefit comes with need to detect when …
of interest to humanity. However, along with this benefit comes with need to detect when …
Chromosome-level baobab (Adansonia digitata) genome illuminates its evolutionary insights
…, J Kitony, K Colt, B Abramson, N Hartwick, S Petrus… - 2024 - researchsquare.com
Baobab,(Adansonia digitata), is a long-lived tree endemic to Africa that holds great
economic, ecological, and cultural value. However, our knowledge of its genomic features, …
economic, ecological, and cultural value. However, our knowledge of its genomic features, …