User profiles for Sergey Nikolenko
Sergey NikolenkoSteklov Institute of Mathematics at St. Petersburg, Russia Verified email at logic.pdmi.ras.ru Cited by 30409 |
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
…, AS Kulikov, VM Lesin, SI Nikolenko… - Journal of …, 2012 - liebertpub.com
The lion's share of bacteria in various environments cannot be cloned in the laboratory and
thus cannot be sequenced using existing technologies. A major goal of single-cell genomics …
thus cannot be sequenced using existing technologies. A major goal of single-cell genomics …
[HTML][HTML] Molecular sets (MOSES): a benchmarking platform for molecular generation models
Generative models are becoming a tool of choice for exploring the molecular space. These
models learn on a large training dataset and produce novel molecular structures with similar …
models learn on a large training dataset and produce novel molecular structures with similar …
[HTML][HTML] BayesHammer: Bayesian clustering for error correction in single-cell sequencing
Error correction of sequenced reads remains a difficult task, especially in single-cell
sequencing projects with extremely non-uniform coverage. While existing error correction tools …
sequencing projects with extremely non-uniform coverage. While existing error correction tools …
[BOOK][B] Synthetic data for deep learning
SI Nikolenko - 2021 - Springer
You are holding in your hands… oh, come on, who holds books like this in their hands
anymore? Anyway, you are reading this, and it means that I have managed to release one of the …
anymore? Anyway, you are reading this, and it means that I have managed to release one of the …
druGAN: an advanced generative adversarial autoencoder model for de novo generation of new molecules with desired molecular properties in silico
Deep generative adversarial networks (GANs) are the emerging technology in drug discovery
and biomarker development. In our recent work, we demonstrated a proof-of-concept of …
and biomarker development. In our recent work, we demonstrated a proof-of-concept of …
Topic modelling for qualitative studies
SI Nikolenko, S Koltcov… - Journal of Information …, 2017 - journals.sagepub.com
Qualitative studies, such as sociological research, opinion analysis and media studies, can
benefit greatly from automated topic mining provided by topic models such as latent Dirichlet …
benefit greatly from automated topic mining provided by topic models such as latent Dirichlet …
Tooth detection and numbering in panoramic radiographs using convolutional neural networks
…, MA Kharchenko, SI Nikolenko… - Dentomaxillofacial …, 2019 - birpublications.org
Objectives: Analysis of dental radiographs is an important part of the diagnostic process in
daily clinical practice. Interpretation by an expert includes teeth detection and numbering. In …
daily clinical practice. Interpretation by an expert includes teeth detection and numbering. In …
FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry
High-mass-resolution imaging mass spectrometry promises to localize hundreds of metabolites
in tissues, cell cultures, and agar plates with cellular resolution, but it is hampered by the …
in tissues, cell cultures, and agar plates with cellular resolution, but it is hampered by the …
Recvae: A new variational autoencoder for top-n recommendations with implicit feedback
Recent research has shown the advantages of using autoencoders based on deep neural
networks for collaborative filtering. In particular, the recently proposed Mult-VAE model, which …
networks for collaborative filtering. In particular, the recently proposed Mult-VAE model, which …
Intrinsic dimension estimation for robust detection of ai-generated texts
…, D Cherniavskii, S Nikolenko… - Advances in …, 2024 - proceedings.neurips.cc
Rapidly increasing quality of AI-generated content makes it difficult to distinguish between
human and AI-generated texts, which may lead to undesirable consequences for society. …
human and AI-generated texts, which may lead to undesirable consequences for society. …