Rationale and design of the kidney precision medicine project

…, M Eadon, M Ferkowicz, K Kelly, T Sutton, S Winfree… - Kidney international, 2021 - Elsevier
Chronic kidney disease (CKD) and acute kidney injury (AKI) are common, heterogeneous,
and morbid diseases. Mechanistic characterization of CKD and AKI in patients may facilitate a …

A multimodal and integrated approach to interrogate human kidney biopsies with rigor and reproducibility: guidelines from the Kidney Precision Medicine Project

…, EU Azeloglu, R Sealfon, S Winfree… - Physiological …, 2021 - journals.physiology.org
Comprehensive and spatially mapped molecular atlases of organs at a cellular level are a
critical resource to gain insights into pathogenic mechanisms and personalized therapies for …

[HTML][HTML] Integration of spatial and single-cell transcriptomics localizes epithelial cell–immune cross-talk in kidney injury

RM Ferreira, AR Sabo, S Winfree, KS Collins… - JCI insight, 2021 - ncbi.nlm.nih.gov
Single-cell sequencing studies have characterized the transcriptomic signature of cell types
within the kidney. However, the spatial distribution of acute kidney injury (AKI) is regional …

[HTML][HTML] The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline

…, H Gao, YL Liu, KS Collins, YH Cheng, S Winfree… - Elife, 2021 - elifesciences.org
Sepsis is a dynamic state that progresses at variable rates and has life-threatening
consequences. Staging patients along the sepsis timeline requires a thorough knowledge of the …

[HTML][HTML] An atlas of healthy and injured cell states and niches in the human kidney

BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira… - Nature, 2023 - nature.com
Understanding kidney disease relies on defining the complexity of cell types and states, their
associated molecular profiles and interactions within tissue neighbourhoods 1 . Here we …

Dissemination of invasive Salmonella via bacterial-induced extrusion of mucosal epithelia

…, BA Vallance, J Celli, S Winfree… - Proceedings of the …, 2010 - National Acad Sciences
Salmonella enterica is an intracellular bacterial pathogen that resides and proliferates
within a membrane-bound vacuole in epithelial cells of the gut and gallbladder. Although …

Coxiella burnetii Phase I and II Variants Replicate with Similar Kinetics in Degradative Phagolysosome-Like Compartments of Human Macrophages

D Howe, JG Shannon, S Winfree… - Infection and …, 2010 - Am Soc Microbiol
Coxiella burnetii infects mononuclear phagocytes, where it directs biogenesis of a vacuolar
niche termed the parasitophorous vacuole (PV). Owing to its lumenal pH (∼5) and fusion …

[HTML][HTML] The Bimodal Lifestyle of Intracellular Salmonella in Epithelial Cells: Replication in the Cytosol Obscures Defects in Vacuolar Replication

P Malik-Kale, S Winfree, O Steele-Mortimer - PloS one, 2012 - journals.plos.org
Salmonella enterica serovar Typhimurium invades and proliferates within epithelial cells.
Intracellular bacteria replicate within a membrane bound vacuole known as the Salmonella …

Dynamic Behavior of Salmonella‐Induced Membrane Tubules in Epithelial Cells

D Drecktrah, S Levine‐Wilkinson, T Dam, S Winfree… - Traffic, 2008 - Wiley Online Library
Salmonella Typhimurium is a facultative intracellular pathogen that causes acute gastroenteritis
in man. Intracellular Salmonella survive and replicate within a modified phagosome …

[HTML][HTML] Salmonella – At Home in the Host Cell

P Malik-Kale, CE Jolly, S Lathrop, S Winfree… - Frontiers in …, 2011 - frontiersin.org
The Gram-negative bacterium Salmonella enterica has developed an array of sophisticated
tools to manipulate the host cell and establish an intracellular niche, for successful …